Analysis of Ligand-Protein Contacts in PDB entry:
3PDE


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 3PDE. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DMA
A
309 14DIMETHYLALLYL DIPHOSPHATE
lig 2
DMA
A
310 14DIMETHYLALLYL DIPHOSPHATE
lig 3
MG
A
311 1MAGNESIUM ION
lig 4
MG
A
312 1MAGNESIUM ION
lig 5
GOL
A
313 6GLYCEROL
lig 6
DMA
B
309 14DIMETHYLALLYL DIPHOSPHATE
lig 7
MG
B
310 1MAGNESIUM ION
lig 8
MG
B
311 1MAGNESIUM ION
lig 9
DMA
B
312 14DIMETHYLALLYL DIPHOSPHATE
lig 10
DMA
C
309 14DIMETHYLALLYL DIPHOSPHATE
lig 11
DMA
C
310 14DIMETHYLALLYL DIPHOSPHATE
lig 12
MG
C
311 1MAGNESIUM ION
lig 13
MG
C
312 1MAGNESIUM ION
lig 14
GOL
C
313 6GLYCEROL
lig 15
DMA
D
309 14DIMETHYLALLYL DIPHOSPHATE
lig 16
MG
D
310 1MAGNESIUM ION
lig 17
MG
D
311 1MAGNESIUM ION
lig 18
DMA
D
312 14DIMETHYLALLYL DIPHOSPHATE