Analysis of Ligand-Protein Contacts in PDB entry:
3PKJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 59 ligands in PDB entry 3PKJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
A2N
A
1000 39 2-YL]METHYL DIHYDROGEN DIPHOSPHATE
lig 2
ZN
A
354 1ZINC ION
lig 3
SO4
A
1008 5SULFATE ION
lig 4
UNX
A
355 1UNKNOWN ATOM OR ION
lig 5
UNX
A
356 1UNKNOWN ATOM OR ION
lig 6
UNX
A
357 1UNKNOWN ATOM OR ION
lig 7
A2N
B
1000 39 2-YL]METHYL DIHYDROGEN DIPHOSPHATE
lig 8
ZN
B
354 1ZINC ION
lig 9
SO4
B
1005 5SULFATE ION
lig 10
SO4
B
1006 5SULFATE ION
lig 11
SO4
B
1011 5SULFATE ION
lig 12
UNX
B
355 1UNKNOWN ATOM OR ION
lig 13
UNX
B
356 1UNKNOWN ATOM OR ION
lig 14
UNX
B
357 1UNKNOWN ATOM OR ION
lig 15
UNX
B
358 1UNKNOWN ATOM OR ION
lig 16
UNX
B
359 1UNKNOWN ATOM OR ION
lig 17
A2N
C
1000 39 2-YL]METHYL DIHYDROGEN DIPHOSPHATE
lig 18
ZN
C
354 1ZINC ION
lig 19
SO4
C
1003 5SULFATE ION
lig 20
UNX
C
355 1UNKNOWN ATOM OR ION
lig 21
UNX
C
356 1UNKNOWN ATOM OR ION
lig 22
UNX
C
357 1UNKNOWN ATOM OR ION
lig 23
UNX
C
358 1UNKNOWN ATOM OR ION
lig 24
UNX
C
359 1UNKNOWN ATOM OR ION
lig 25
UNX
C
360 1UNKNOWN ATOM OR ION
lig 26
UNX
C
361 1UNKNOWN ATOM OR ION
lig 27
UNX
C
362 1UNKNOWN ATOM OR ION
lig 28
UNX
C
363 1UNKNOWN ATOM OR ION
lig 29
UNX
C
364 1UNKNOWN ATOM OR ION
lig 30
UNX
C
365 1UNKNOWN ATOM OR ION
lig 31
UNX
C
366 1UNKNOWN ATOM OR ION
lig 32
A2N
D
1000 39 2-YL]METHYL DIHYDROGEN DIPHOSPHATE
lig 33
ZN
D
354 1ZINC ION
lig 34
SO4
D
355 5SULFATE ION
lig 35
UNX
D
356 1UNKNOWN ATOM OR ION
lig 36
UNX
D
357 1UNKNOWN ATOM OR ION
lig 37
UNX
D
358 1UNKNOWN ATOM OR ION
lig 38
A2N
E
1000 39 2-YL]METHYL DIHYDROGEN DIPHOSPHATE
lig 39
ZN
E
354 1ZINC ION
lig 40
SO4
E
1002 5SULFATE ION
lig 41
SO4
E
1007 5SULFATE ION
lig 42
SO4
E
1010 5SULFATE ION
lig 43
UNX
E
355 1UNKNOWN ATOM OR ION
lig 44
UNX
E
356 1UNKNOWN ATOM OR ION
lig 45
UNX
E
357 1UNKNOWN ATOM OR ION
lig 46
UNX
E
358 1UNKNOWN ATOM OR ION
lig 47
A2N
F
1000 39 2-YL]METHYL DIHYDROGEN DIPHOSPHATE
lig 48
ZN
F
354 1ZINC ION
lig 49
SO4
F
1001 5SULFATE ION
lig 50
SO4
F
1004 5SULFATE ION
lig 51
SO4
F
1009 5SULFATE ION
lig 52
UNX
F
355 1UNKNOWN ATOM OR ION
lig 53
UNX
F
356 1UNKNOWN ATOM OR ION
lig 54
UNX
F
357 1UNKNOWN ATOM OR ION
lig 55
UNX
F
358 1UNKNOWN ATOM OR ION
lig 56
UNX
F
359 1UNKNOWN ATOM OR ION
lig 57
UNX
F
360 1UNKNOWN ATOM OR ION
lig 58
UNX
F
361 1UNKNOWN ATOM OR ION
lig 59
UNX
F
362 1UNKNOWN ATOM OR ION