Analysis of Ligand-Protein Contacts in PDB entry:
3PPS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 63 ligands in PDB entry 3PPS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 6
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
F
6 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 16
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 17
MAN
I
5 11ALPHA-D-MANNOPYRANOSE
lig 18
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 25
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 32
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
BMA
P
3 11BETA-D-MANNOPYRANOSE
lig 35
MAN
P
4 11ALPHA-D-MANNOPYRANOSE
lig 36
MAN
P
5 11ALPHA-D-MANNOPYRANOSE
lig 37
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
CU
A
601 1COPPER (II) ION
lig 40
CU
A
602 1COPPER (II) ION
lig 41
CU
A
603 1COPPER (II) ION
lig 42
CU
A
604 1COPPER (II) ION
lig 43
OXY
A
620 2OXYGEN MOLECULE
lig 44
NAG
A
720 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
NAG
A
730 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
NAG
A
760 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
CU
B
601 1COPPER (II) ION
lig 48
CU
B
602 1COPPER (II) ION
lig 49
CU
B
603 1COPPER (II) ION
lig 50
CU
B
604 1COPPER (II) ION
lig 51
NAG
B
720 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
B
760 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
NAG
B
770 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 54
CU
C
601 1COPPER (II) ION
lig 55
CU
C
602 1COPPER (II) ION
lig 56
CU
C
603 1COPPER (II) ION
lig 57
CU
C
604 1COPPER (II) ION
lig 58
NAG
C
730 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 59
CU
D
601 1COPPER (II) ION
lig 60
CU
D
602 1COPPER (II) ION
lig 61
CU
D
603 1COPPER (II) ION
lig 62
CU
D
604 1COPPER (II) ION
lig 63
NAG
D
720 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE