Analysis of Ligand-Protein Contacts in PDB entry:
3PY4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 31 ligands in PDB entry 3PY4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
MAN
C
3 11ALPHA-D-MANNOPYRANOSE
lig 7
CA
A
606 1CALCIUM ION
lig 8
HEM
A
605 43PROTOPORPHYRIN IX CONTAINING FE
lig 9
NAG
A
596 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
IOD
A
607 1IODIDE ION
lig 12
IOD
A
608 1IODIDE ION
lig 13
IOD
A
609 1IODIDE ION
lig 14
IOD
A
610 1IODIDE ION
lig 15
IOD
A
611 1IODIDE ION
lig 16
IOD
A
612 1IODIDE ION
lig 17
IOD
A
614 1IODIDE ION
lig 18
IOD
A
616 1IODIDE ION
lig 19
IOD
A
597 1IODIDE ION
lig 20
IOD
A
620 1IODIDE ION
lig 21
IOD
A
621 1IODIDE ION
lig 22
IOD
A
622 1IODIDE ION
lig 23
IOD
A
623 1IODIDE ION
lig 24
IOD
A
624 1IODIDE ION
lig 25
IOD
A
625 1IODIDE ION
lig 26
TYL
A
598 11N-(4-HYDROXYPHENYL)ACETAMIDE (TYLENOL)
lig 27
MPD
A
613 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 28
SCN
A
700 3THIOCYANATE ION
lig 29
EDO
A
701 41,2-ETHANEDIOL
lig 30
EDO
A
702 41,2-ETHANEDIOL
lig 31
GOL
A
617 6GLYCEROL