Analysis of Ligand-Protein Contacts in PDB entry:
3Q9B


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 167 ligands in PDB entry 3Q9B. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
DMS
A
403 4DIMETHYL SULFOXIDE
lig 2
DMS
A
405 4DIMETHYL SULFOXIDE
lig 3
DMS
A
413 4DIMETHYL SULFOXIDE
lig 4
DMS
A
415 4DIMETHYL SULFOXIDE
lig 5
DMS
A
417 4DIMETHYL SULFOXIDE
lig 6
DMS
A
419 4DIMETHYL SULFOXIDE
lig 7
DMS
A
423 4DIMETHYL SULFOXIDE
lig 8
DMS
A
342 4DIMETHYL SULFOXIDE
lig 9
DMS
A
411 4DIMETHYL SULFOXIDE
lig 10
DMS
A
421 4DIMETHYL SULFOXIDE
lig 11
B3N
A
401 22 OXOHEPTYL]BENZAMIDE
lig 12
K
A
343 1POTASSIUM ION
lig 13
NA
A
344 1SODIUM ION
lig 14
ZN
A
345 1ZINC ION
lig 15
K
A
346 1POTASSIUM ION
lig 16
DMS
B
403 4DIMETHYL SULFOXIDE
lig 17
DMS
B
405 4DIMETHYL SULFOXIDE
lig 18
DMS
B
411 4DIMETHYL SULFOXIDE
lig 19
DMS
B
413 4DIMETHYL SULFOXIDE
lig 20
DMS
B
415 4DIMETHYL SULFOXIDE
lig 21
DMS
B
417 4DIMETHYL SULFOXIDE
lig 22
DMS
B
419 4DIMETHYL SULFOXIDE
lig 23
DMS
B
423 4DIMETHYL SULFOXIDE
lig 24
DMS
B
342 4DIMETHYL SULFOXIDE
lig 25
B3N
B
407 22 OXOHEPTYL]BENZAMIDE
lig 26
K
B
343 1POTASSIUM ION
lig 27
NA
B
344 1SODIUM ION
lig 28
ZN
B
345 1ZINC ION
lig 29
K
B
346 1POTASSIUM ION
lig 30
DMS
C
405 4DIMETHYL SULFOXIDE
lig 31
DMS
C
415 4DIMETHYL SULFOXIDE
lig 32
DMS
C
419 4DIMETHYL SULFOXIDE
lig 33
DMS
C
423 4DIMETHYL SULFOXIDE
lig 34
DMS
C
411 4DIMETHYL SULFOXIDE
lig 35
DMS
C
421 4DIMETHYL SULFOXIDE
lig 36
B3N
C
401 22 OXOHEPTYL]BENZAMIDE
lig 37
K
C
342 1POTASSIUM ION
lig 38
NA
C
343 1SODIUM ION
lig 39
ZN
C
344 1ZINC ION
lig 40
K
C
345 1POTASSIUM ION
lig 41
DMS
D
405 4DIMETHYL SULFOXIDE
lig 42
DMS
D
411 4DIMETHYL SULFOXIDE
lig 43
DMS
D
413 4DIMETHYL SULFOXIDE
lig 44
DMS
D
415 4DIMETHYL SULFOXIDE
lig 45
DMS
D
417 4DIMETHYL SULFOXIDE
lig 46
DMS
D
419 4DIMETHYL SULFOXIDE
lig 47
DMS
D
421 4DIMETHYL SULFOXIDE
lig 48
DMS
D
423 4DIMETHYL SULFOXIDE
lig 49
DMS
D
403 4DIMETHYL SULFOXIDE
lig 50
DMS
D
342 4DIMETHYL SULFOXIDE
lig 51
DMS
D
343 4DIMETHYL SULFOXIDE
lig 52
B3N
D
407 22 OXOHEPTYL]BENZAMIDE
lig 53
K
D
344 1POTASSIUM ION
lig 54
NA
D
345 1SODIUM ION
lig 55
ZN
D
346 1ZINC ION
lig 56
K
D
347 1POTASSIUM ION
lig 57
DMS
E
403 4DIMETHYL SULFOXIDE
lig 58
DMS
E
405 4DIMETHYL SULFOXIDE
lig 59
DMS
E
413 4DIMETHYL SULFOXIDE
lig 60
DMS
E
415 4DIMETHYL SULFOXIDE
lig 61
DMS
E
417 4DIMETHYL SULFOXIDE
lig 62
DMS
E
419 4DIMETHYL SULFOXIDE
lig 63
DMS
E
423 4DIMETHYL SULFOXIDE
lig 64
DMS
E
342 4DIMETHYL SULFOXIDE
lig 65
DMS
E
411 4DIMETHYL SULFOXIDE
lig 66
DMS
E
421 4DIMETHYL SULFOXIDE
lig 67
B3N
E
401 22 OXOHEPTYL]BENZAMIDE
lig 68
K
E
343 1POTASSIUM ION
lig 69
NA
E
344 1SODIUM ION
lig 70
ZN
E
345 1ZINC ION
lig 71
K
E
346 1POTASSIUM ION
lig 72
DMS
F
421 4DIMETHYL SULFOXIDE
lig 73
DMS
F
413 4DIMETHYL SULFOXIDE
lig 74
DMS
F
417 4DIMETHYL SULFOXIDE
lig 75
DMS
F
405 4DIMETHYL SULFOXIDE
lig 76
DMS
F
411 4DIMETHYL SULFOXIDE
lig 77
DMS
F
342 4DIMETHYL SULFOXIDE
lig 78
DMS
F
415 4DIMETHYL SULFOXIDE
lig 79
DMS
F
343 4DIMETHYL SULFOXIDE
lig 80
DMS
F
419 4DIMETHYL SULFOXIDE
lig 81
DMS
F
344 4DIMETHYL SULFOXIDE
lig 82
DMS
F
423 4DIMETHYL SULFOXIDE
lig 83
B3N
F
407 22 OXOHEPTYL]BENZAMIDE
lig 84
K
F
345 1POTASSIUM ION
lig 85
NA
F
346 1SODIUM ION
lig 86
ZN
F
347 1ZINC ION
lig 87
K
F
348 1POTASSIUM ION
lig 88
DMS
G
403 4DIMETHYL SULFOXIDE
lig 89
DMS
G
405 4DIMETHYL SULFOXIDE
lig 90
DMS
G
411 4DIMETHYL SULFOXIDE
lig 91
DMS
G
413 4DIMETHYL SULFOXIDE
lig 92
DMS
G
415 4DIMETHYL SULFOXIDE
lig 93
DMS
G
417 4DIMETHYL SULFOXIDE
lig 94
DMS
G
419 4DIMETHYL SULFOXIDE
lig 95
DMS
G
423 4DIMETHYL SULFOXIDE
lig 96
DMS
G
342 4DIMETHYL SULFOXIDE
lig 97
DMS
G
343 4DIMETHYL SULFOXIDE
lig 98
B3N
G
401 22 OXOHEPTYL]BENZAMIDE
lig 99
K
G
344 1POTASSIUM ION
lig 100
NA
G
345 1SODIUM ION
lig 101
ZN
G
346 1ZINC ION
lig 102
K
G
347 1POTASSIUM ION
lig 103
DMS
H
411 4DIMETHYL SULFOXIDE
lig 104
DMS
H
421 4DIMETHYL SULFOXIDE
lig 105
DMS
H
405 4DIMETHYL SULFOXIDE
lig 106
DMS
H
413 4DIMETHYL SULFOXIDE
lig 107
DMS
H
415 4DIMETHYL SULFOXIDE
lig 108
DMS
H
417 4DIMETHYL SULFOXIDE
lig 109
DMS
H
419 4DIMETHYL SULFOXIDE
lig 110
DMS
H
423 4DIMETHYL SULFOXIDE
lig 111
B3N
H
407 22 OXOHEPTYL]BENZAMIDE
lig 112
K
H
342 1POTASSIUM ION
lig 113
NA
H
343 1SODIUM ION
lig 114
ZN
H
344 1ZINC ION
lig 115
K
H
345 1POTASSIUM ION
lig 116
DMS
I
411 4DIMETHYL SULFOXIDE
lig 117
DMS
I
421 4DIMETHYL SULFOXIDE
lig 118
DMS
I
405 4DIMETHYL SULFOXIDE
lig 119
DMS
I
413 4DIMETHYL SULFOXIDE
lig 120
DMS
I
415 4DIMETHYL SULFOXIDE
lig 121
DMS
I
417 4DIMETHYL SULFOXIDE
lig 122
DMS
I
419 4DIMETHYL SULFOXIDE
lig 123
DMS
I
423 4DIMETHYL SULFOXIDE
lig 124
B3N
I
401 22 OXOHEPTYL]BENZAMIDE
lig 125
K
I
342 1POTASSIUM ION
lig 126
NA
I
343 1SODIUM ION
lig 127
ZN
I
344 1ZINC ION
lig 128
DMS
J
403 4DIMETHYL SULFOXIDE
lig 129
DMS
J
405 4DIMETHYL SULFOXIDE
lig 130
DMS
J
413 4DIMETHYL SULFOXIDE
lig 131
DMS
J
415 4DIMETHYL SULFOXIDE
lig 132
DMS
J
417 4DIMETHYL SULFOXIDE
lig 133
DMS
J
419 4DIMETHYL SULFOXIDE
lig 134
DMS
J
423 4DIMETHYL SULFOXIDE
lig 135
B3N
J
407 22 OXOHEPTYL]BENZAMIDE
lig 136
K
J
342 1POTASSIUM ION
lig 137
NA
J
343 1SODIUM ION
lig 138
ZN
J
344 1ZINC ION
lig 139
K
J
345 1POTASSIUM ION
lig 140
DMS
K
403 4DIMETHYL SULFOXIDE
lig 141
DMS
K
411 4DIMETHYL SULFOXIDE
lig 142
DMS
K
421 4DIMETHYL SULFOXIDE
lig 143
DMS
K
342 4DIMETHYL SULFOXIDE
lig 144
DMS
K
405 4DIMETHYL SULFOXIDE
lig 145
DMS
K
413 4DIMETHYL SULFOXIDE
lig 146
DMS
K
415 4DIMETHYL SULFOXIDE
lig 147
DMS
K
417 4DIMETHYL SULFOXIDE
lig 148
DMS
K
419 4DIMETHYL SULFOXIDE
lig 149
DMS
K
423 4DIMETHYL SULFOXIDE
lig 150
B3N
K
401 22 OXOHEPTYL]BENZAMIDE
lig 151
K
K
343 1POTASSIUM ION
lig 152
NA
K
344 1SODIUM ION
lig 153
ZN
K
345 1ZINC ION
lig 154
K
K
346 1POTASSIUM ION
lig 155
DMS
L
421 4DIMETHYL SULFOXIDE
lig 156
DMS
L
405 4DIMETHYL SULFOXIDE
lig 157
DMS
L
413 4DIMETHYL SULFOXIDE
lig 158
DMS
L
415 4DIMETHYL SULFOXIDE
lig 159
DMS
L
417 4DIMETHYL SULFOXIDE
lig 160
DMS
L
419 4DIMETHYL SULFOXIDE
lig 161
DMS
L
342 4DIMETHYL SULFOXIDE
lig 162
DMS
L
423 4DIMETHYL SULFOXIDE
lig 163
B3N
L
407 22 OXOHEPTYL]BENZAMIDE
lig 164
K
L
343 1POTASSIUM ION
lig 165
NA
L
344 1SODIUM ION
lig 166
ZN
L
345 1ZINC ION
lig 167
K
L
346 1POTASSIUM ION