Analysis of Ligand-Protein Contacts in PDB entry:
3R5O


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 24 ligands in PDB entry 3R5O. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
CA
A
606 1CALCIUM ION
lig 5
HEM
A
605 43PROTOPORPHYRIN IX CONTAINING FE
lig 6
NAG
A
596 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
599 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
IOD
A
607 1IODIDE ION
lig 10
IOD
A
608 1IODIDE ION
lig 11
IOD
A
609 1IODIDE ION
lig 12
IOD
A
611 1IODIDE ION
lig 13
IOD
A
612 1IODIDE ION
lig 14
IOD
A
614 1IODIDE ION
lig 15
IOD
A
621 1IODIDE ION
lig 16
IOD
A
622 1IODIDE ION
lig 17
IOD
A
623 1IODIDE ION
lig 18
IOD
A
624 1IODIDE ION
lig 19
EUG
A
597 112-METHOXY-4-[(1E)-PROP-1-EN-1-YL]PHENOL
lig 20
MPD
A
598 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 21
SCN
A
700 3THIOCYANATE ION
lig 22
EDO
A
600 41,2-ETHANEDIOL
lig 23
EDO
A
603 41,2-ETHANEDIOL
lig 24
GOL
A
610 6GLYCEROL