Analysis of Ligand-Protein Contacts in PDB entry:
3RKE


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 18 ligands in PDB entry 3RKE. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
A
596 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
A
599 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
CA
A
1000 1CALCIUM ION
lig 7
HEM
A
1001 43PROTOPORPHYRIN IX CONTAINING FE
lig 8
IOD
A
597 1IODIDE ION
lig 9
EDO
A
598 41,2-ETHANEDIOL
lig 10
IOD
A
600 1IODIDE ION
lig 11
IOD
A
601 1IODIDE ION
lig 12
IOD
A
604 1IODIDE ION
lig 13
IOD
A
605 1IODIDE ION
lig 14
IOD
A
606 1IODIDE ION
lig 15
IOD
A
607 1IODIDE ION
lig 16
IOD
A
608 1IODIDE ION
lig 17
IOD
A
609 1IODIDE ION
lig 18
MZZ
A
610 14(4-AMINOPHENYL)-IMIDAZOL-1-YL-METHANONE