Analysis of Ligand-Protein Contacts in PDB entry:
3RUM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 3RUM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CCS
A
375 6CARBOXYMETHYLATED CYSTEINE
lig 2
DAL
A
377 5D-ALANINE
lig 3
DAL
A
378 6D-ALANINE
lig 4
GHP
B
1 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 5
HTY
B
2 13(BETAR)-BETA-HYDROXY-D-TYROSINE
lig 6
MP4
B
3 13(2S)-AMINO(3,5-DIHYDROXY-4-METHYLPHENYL)ET
lig 7
GHP
B
4 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 8
GHP
B
5 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 9
OMX
B
6 13(BETAR)-BETA-HYDROXY-L-TYROSINE
lig 10
MDF
B
7 14META, META'-DI-HYDROXY-PHENYLALANINE
lig 11
GHP
C
1 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 12
HTY
C
2 13(BETAR)-BETA-HYDROXY-D-TYROSINE
lig 13
MP4
C
3 13(2S)-AMINO(3,5-DIHYDROXY-4-METHYLPHENYL)ET
lig 14
GHP
C
4 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 15
GHP
C
5 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 16
OMX
C
6 13(BETAR)-BETA-HYDROXY-L-TYROSINE
lig 17
MDF
C
7 14META, META'-DI-HYDROXY-PHENYLALANINE
lig 18
BGC
D
1 11BETA-D-GLUCOPYRANOSE
lig 19
MAN
D
2 11ALPHA-D-MANNOPYRANOSE
lig 20
BXY
D
3 9ALPHA-D-ARABINOFURANOSE
lig 21
RAM
D
4 10ALPHA-L-RHAMNOPYRANOSE
lig 22
BGC
E
1 11BETA-D-GLUCOPYRANOSE
lig 23
MAN
E
2 11ALPHA-D-MANNOPYRANOSE
lig 24
BXY
E
3 9ALPHA-D-ARABINOFURANOSE
lig 25
RAM
E
4 10ALPHA-L-RHAMNOPYRANOSE
lig 26
GLC
F
1 12ALPHA-D-GLUCOPYRANOSE
lig 27
GLC
F
2 11ALPHA-D-GLUCOPYRANOSE
lig 28
IPA
A
402 4ISOPROPYL ALCOHOL
lig 29
IPA
A
403 4ISOPROPYL ALCOHOL
lig 30
IPA
A
404 4ISOPROPYL ALCOHOL
lig 31
SO4
A
405 5SULFATE ION
lig 32
SO4
A
406 5SULFATE ION
lig 33
SO4
A
407 5SULFATE ION
lig 34
RST
B
12 93-AMINO-2,3,6-TRIDEOXY-ALPHA-L-RIBO-HEXOPY
lig 35
MAN
B
13 11ALPHA-D-MANNOPYRANOSE
lig 36
RST
C
12 93-AMINO-2,3,6-TRIDEOXY-ALPHA-L-RIBO-HEXOPY
lig 37
MAN
C
13 11ALPHA-D-MANNOPYRANOSE
lig 38
SO4
C
107 5SULFATE ION