Analysis of Ligand-Protein Contacts in PDB entry:
3T09


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 138 ligands in PDB entry 3T09. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
149
A
2001 12D-GALACTONOLACTONE
lig 2
MG
A
3001 1MAGNESIUM ION
lig 3
MG
A
3002 1MAGNESIUM ION
lig 4
MG
A
3003 1MAGNESIUM ION
lig 5
MG
A
3005 1MAGNESIUM ION
lig 6
NA
A
3101 1SODIUM ION
lig 7
NA
A
3102 1SODIUM ION
lig 8
NA
A
3103 1SODIUM ION
lig 9
NA
A
3104 1SODIUM ION
lig 10
DMS
A
8001 4DIMETHYL SULFOXIDE
lig 11
DMS
A
8002 4DIMETHYL SULFOXIDE
lig 12
DMS
A
8003 4DIMETHYL SULFOXIDE
lig 13
DMS
A
8004 4DIMETHYL SULFOXIDE
lig 14
DMS
A
8005 4DIMETHYL SULFOXIDE
lig 15
DMS
A
8006 4DIMETHYL SULFOXIDE
lig 16
DMS
A
8007 4DIMETHYL SULFOXIDE
lig 17
DMS
A
8008 4DIMETHYL SULFOXIDE
lig 18
DMS
A
8009 4DIMETHYL SULFOXIDE
lig 19
DMS
A
8010 4DIMETHYL SULFOXIDE
lig 20
DMS
A
8011 4DIMETHYL SULFOXIDE
lig 21
DMS
A
8012 4DIMETHYL SULFOXIDE
lig 22
DMS
A
8013 4DIMETHYL SULFOXIDE
lig 23
DMS
A
8014 4DIMETHYL SULFOXIDE
lig 24
DMS
A
8015 4DIMETHYL SULFOXIDE
lig 25
DMS
A
8016 4DIMETHYL SULFOXIDE
lig 26
DMS
A
8017 4DIMETHYL SULFOXIDE
lig 27
DMS
A
8018 4DIMETHYL SULFOXIDE
lig 28
DMS
A
8019 4DIMETHYL SULFOXIDE
lig 29
DMS
A
8020 4DIMETHYL SULFOXIDE
lig 30
DMS
A
8021 4DIMETHYL SULFOXIDE
lig 31
DMS
A
8022 4DIMETHYL SULFOXIDE
lig 32
DMS
A
8023 4DIMETHYL SULFOXIDE
lig 33
DMS
A
8024 4DIMETHYL SULFOXIDE
lig 34
DMS
A
8025 4DIMETHYL SULFOXIDE
lig 35
DMS
A
8026 4DIMETHYL SULFOXIDE
lig 36
DMS
A
8027 4DIMETHYL SULFOXIDE
lig 37
DMS
A
8028 4DIMETHYL SULFOXIDE
lig 38
DMS
A
8029 4DIMETHYL SULFOXIDE
lig 39
149
B
2001 12D-GALACTONOLACTONE
lig 40
MG
B
3001 1MAGNESIUM ION
lig 41
MG
B
3002 1MAGNESIUM ION
lig 42
MG
B
3003 1MAGNESIUM ION
lig 43
NA
B
3101 1SODIUM ION
lig 44
NA
B
3102 1SODIUM ION
lig 45
NA
B
3103 1SODIUM ION
lig 46
NA
B
3104 1SODIUM ION
lig 47
DMS
B
8001 4DIMETHYL SULFOXIDE
lig 48
DMS
B
8002 4DIMETHYL SULFOXIDE
lig 49
DMS
B
8003 4DIMETHYL SULFOXIDE
lig 50
DMS
B
8004 4DIMETHYL SULFOXIDE
lig 51
DMS
B
8005 4DIMETHYL SULFOXIDE
lig 52
DMS
B
8006 4DIMETHYL SULFOXIDE
lig 53
DMS
B
8007 4DIMETHYL SULFOXIDE
lig 54
DMS
B
8008 4DIMETHYL SULFOXIDE
lig 55
DMS
B
8009 4DIMETHYL SULFOXIDE
lig 56
DMS
B
8010 4DIMETHYL SULFOXIDE
lig 57
DMS
B
8011 4DIMETHYL SULFOXIDE
lig 58
DMS
B
8012 4DIMETHYL SULFOXIDE
lig 59
DMS
B
8013 4DIMETHYL SULFOXIDE
lig 60
DMS
B
8014 4DIMETHYL SULFOXIDE
lig 61
DMS
B
8015 4DIMETHYL SULFOXIDE
lig 62
DMS
B
8016 4DIMETHYL SULFOXIDE
lig 63
DMS
B
8017 4DIMETHYL SULFOXIDE
lig 64
DMS
B
8018 4DIMETHYL SULFOXIDE
lig 65
DMS
B
8019 4DIMETHYL SULFOXIDE
lig 66
DMS
B
8020 4DIMETHYL SULFOXIDE
lig 67
DMS
B
8021 4DIMETHYL SULFOXIDE
lig 68
DMS
B
8022 4DIMETHYL SULFOXIDE
lig 69
DMS
B
8023 4DIMETHYL SULFOXIDE
lig 70
DMS
B
8024 4DIMETHYL SULFOXIDE
lig 71
DMS
B
8025 4DIMETHYL SULFOXIDE
lig 72
DMS
B
8026 4DIMETHYL SULFOXIDE
lig 73
DMS
B
8027 4DIMETHYL SULFOXIDE
lig 74
DMS
B
8028 4DIMETHYL SULFOXIDE
lig 75
149
C
2001 12D-GALACTONOLACTONE
lig 76
MG
C
3001 1MAGNESIUM ION
lig 77
MG
C
3002 1MAGNESIUM ION
lig 78
NA
C
3101 1SODIUM ION
lig 79
NA
C
3102 1SODIUM ION
lig 80
NA
C
3103 1SODIUM ION
lig 81
NA
C
3104 1SODIUM ION
lig 82
DMS
C
8001 4DIMETHYL SULFOXIDE
lig 83
DMS
C
8002 4DIMETHYL SULFOXIDE
lig 84
DMS
C
8003 4DIMETHYL SULFOXIDE
lig 85
DMS
C
8004 4DIMETHYL SULFOXIDE
lig 86
DMS
C
8005 4DIMETHYL SULFOXIDE
lig 87
DMS
C
8006 4DIMETHYL SULFOXIDE
lig 88
DMS
C
8007 4DIMETHYL SULFOXIDE
lig 89
DMS
C
8008 4DIMETHYL SULFOXIDE
lig 90
DMS
C
8009 4DIMETHYL SULFOXIDE
lig 91
DMS
C
8010 4DIMETHYL SULFOXIDE
lig 92
DMS
C
8011 4DIMETHYL SULFOXIDE
lig 93
DMS
C
8012 4DIMETHYL SULFOXIDE
lig 94
DMS
C
8013 4DIMETHYL SULFOXIDE
lig 95
DMS
C
8014 4DIMETHYL SULFOXIDE
lig 96
DMS
C
8015 4DIMETHYL SULFOXIDE
lig 97
DMS
C
8016 4DIMETHYL SULFOXIDE
lig 98
DMS
C
8017 4DIMETHYL SULFOXIDE
lig 99
DMS
C
8018 4DIMETHYL SULFOXIDE
lig 100
DMS
C
8019 4DIMETHYL SULFOXIDE
lig 101
DMS
C
8020 4DIMETHYL SULFOXIDE
lig 102
DMS
C
8021 4DIMETHYL SULFOXIDE
lig 103
DMS
C
8022 4DIMETHYL SULFOXIDE
lig 104
DMS
C
8023 4DIMETHYL SULFOXIDE
lig 105
DMS
C
8024 4DIMETHYL SULFOXIDE
lig 106
DMS
C
8025 4DIMETHYL SULFOXIDE
lig 107
149
D
2001 12D-GALACTONOLACTONE
lig 108
MG
D
3001 1MAGNESIUM ION
lig 109
MG
D
3002 1MAGNESIUM ION
lig 110
NA
D
3101 1SODIUM ION
lig 111
NA
D
3102 1SODIUM ION
lig 112
NA
D
3103 1SODIUM ION
lig 113
NA
D
3104 1SODIUM ION
lig 114
DMS
D
8001 4DIMETHYL SULFOXIDE
lig 115
DMS
D
8002 4DIMETHYL SULFOXIDE
lig 116
DMS
D
8003 4DIMETHYL SULFOXIDE
lig 117
DMS
D
8004 4DIMETHYL SULFOXIDE
lig 118
DMS
D
8005 4DIMETHYL SULFOXIDE
lig 119
DMS
D
8006 4DIMETHYL SULFOXIDE
lig 120
DMS
D
8007 4DIMETHYL SULFOXIDE
lig 121
DMS
D
8008 4DIMETHYL SULFOXIDE
lig 122
DMS
D
8009 4DIMETHYL SULFOXIDE
lig 123
DMS
D
8010 4DIMETHYL SULFOXIDE
lig 124
DMS
D
8011 4DIMETHYL SULFOXIDE
lig 125
DMS
D
8012 4DIMETHYL SULFOXIDE
lig 126
DMS
D
8013 4DIMETHYL SULFOXIDE
lig 127
DMS
D
8014 4DIMETHYL SULFOXIDE
lig 128
DMS
D
8015 4DIMETHYL SULFOXIDE
lig 129
DMS
D
8016 4DIMETHYL SULFOXIDE
lig 130
DMS
D
8017 4DIMETHYL SULFOXIDE
lig 131
DMS
D
8018 4DIMETHYL SULFOXIDE
lig 132
DMS
D
8019 4DIMETHYL SULFOXIDE
lig 133
DMS
D
8020 4DIMETHYL SULFOXIDE
lig 134
DMS
D
8021 4DIMETHYL SULFOXIDE
lig 135
DMS
D
8022 4DIMETHYL SULFOXIDE
lig 136
DMS
D
8023 4DIMETHYL SULFOXIDE
lig 137
DMS
D
8024 4DIMETHYL SULFOXIDE
lig 138
DMS
D
8025 4DIMETHYL SULFOXIDE