Analysis of Ligand-Protein Contacts in PDB entry:
3TD5


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 3TD5. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FGA
I
402 9GAMMA-D-GLUTAMIC ACID
lig 2
API
I
403 122,6-DIAMINOPIMELIC ACID
lig 3
DAL
I
404 5D-ALANINE
lig 4
DAL
I
405 6D-ALANINE
lig 5
FGA
J
402 9GAMMA-D-GLUTAMIC ACID
lig 6
API
J
403 122,6-DIAMINOPIMELIC ACID
lig 7
DAL
J
404 5D-ALANINE
lig 8
DAL
J
405 6D-ALANINE
lig 9
FGA
K
402 9GAMMA-D-GLUTAMIC ACID
lig 10
API
K
403 122,6-DIAMINOPIMELIC ACID
lig 11
DAL
K
404 5D-ALANINE
lig 12
DAL
K
405 6D-ALANINE
lig 13
FGA
L
402 9GAMMA-D-GLUTAMIC ACID
lig 14
API
L
403 122,6-DIAMINOPIMELIC ACID
lig 15
DAL
L
404 5D-ALANINE
lig 16
DAL
L
405 6D-ALANINE
lig 17
FGA
M
402 9GAMMA-D-GLUTAMIC ACID
lig 18
API
M
403 122,6-DIAMINOPIMELIC ACID
lig 19
DAL
M
404 5D-ALANINE
lig 20
DAL
M
405 6D-ALANINE
lig 21
FGA
N
402 9GAMMA-D-GLUTAMIC ACID
lig 22
API
N
403 122,6-DIAMINOPIMELIC ACID
lig 23
DAL
N
404 5D-ALANINE
lig 24
DAL
N
405 6D-ALANINE
lig 25
FGA
O
402 9GAMMA-D-GLUTAMIC ACID
lig 26
API
O
403 122,6-DIAMINOPIMELIC ACID
lig 27
DAL
O
404 5D-ALANINE
lig 28
DAL
O
405 6D-ALANINE
lig 29
FGA
P
402 9GAMMA-D-GLUTAMIC ACID
lig 30
API
P
403 122,6-DIAMINOPIMELIC ACID
lig 31
DAL
P
404 5D-ALANINE
lig 32
DAL
P
405 6D-ALANINE
lig 33
CL
A
1 1CHLORIDE ION
lig 34
CL
B
2 1CHLORIDE ION
lig 35
CL
C
3 1CHLORIDE ION
lig 36
CL
E
4 1CHLORIDE ION
lig 37
CL
F
5 1CHLORIDE ION
lig 38
CL
G
6 1CHLORIDE ION