Analysis of Ligand-Protein Contacts in PDB entry:
3TGY


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 24 ligands in PDB entry 3TGY. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
CA
A
606 1CALCIUM ION
lig 7
HEM
A
605 43PROTOPORPHYRIN IX CONTAINING FE
lig 8
NAG
A
596 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
IOD
A
707 1IODIDE ION
lig 11
IOD
A
708 1IODIDE ION
lig 12
IOD
A
709 1IODIDE ION
lig 13
IOD
A
710 1IODIDE ION
lig 14
IOD
A
711 1IODIDE ION
lig 15
IOD
A
715 1IODIDE ION
lig 16
IOD
A
718 1IODIDE ION
lig 17
IOD
A
719 1IODIDE ION
lig 18
IOD
A
720 1IODIDE ION
lig 19
MPD
A
598 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 20
EDO
A
609 41,2-ETHANEDIOL
lig 21
PEG
A
611 7DI(HYDROXYETHYL)ETHER
lig 22
GOL
A
612 6GLYCEROL
lig 23
SCN
A
615 3THIOCYANATE ION
lig 24
ASC
A
800 12ASCORBIC ACID