Analysis of Ligand-Protein Contacts in PDB entry:
3TRV


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 39 ligands in PDB entry 3TRV. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PF5
A
17 162,3,4,5,6-PENTAFLUORO-L-PHENYLALANINE
lig 2
DLE
B
1 8D-LEUCINE
lig 3
DSN
B
2 6D-SERINE
lig 4
DAS
B
3 8D-ASPARTIC ACID
lig 5
DGL
B
4 9D-GLUTAMIC ACID
lig 6
DAS
B
5 8D-ASPARTIC ACID
lig 7
DPN
B
6 11D-PHENYLALANINE
lig 8
DLY
B
7 9D-LYSINE
lig 9
DAL
B
8 5D-ALANINE
lig 10
DVA
B
9 7D-VALINE
lig 11
DPN
B
10 11D-PHENYLALANINE
lig 12
MED
B
12 8D-METHIONINE
lig 13
DTH
B
13 7D-THREONINE
lig 14
DAR
B
14 11D-ARGININE
lig 15
DSN
B
15 6D-SERINE
lig 16
DAL
B
16 5D-ALANINE
lig 17
DPN
B
17 11D-PHENYLALANINE
lig 18
DAL
B
18 5D-ALANINE
lig 19
DSG
B
19 8D-ASPARAGINE
lig 20
DLE
B
20 8D-LEUCINE
lig 21
DPR
B
21 7D-PROLINE
lig 22
DLE
B
22 8D-LEUCINE
lig 23
DTR
B
23 14D-TRYPTOPHAN
lig 24
DLY
B
24 9D-LYSINE
lig 25
DGN
B
25 9D-GLUTAMINE
lig 26
DGN
B
26 9D-GLUTAMINE
lig 27
DHI
B
27 10D-HISTIDINE
lig 28
DLE
B
28 8D-LEUCINE
lig 29
DLY
B
29 9D-LYSINE
lig 30
DLY
B
30 9D-LYSINE
lig 31
DGL
B
31 9D-GLUTAMIC ACID
lig 32
DLY
B
32 9D-LYSINE
lig 33
DLE
B
34 8D-LEUCINE
lig 34
DPN
B
35 12D-PHENYLALANINE
lig 35
SO4
A
36 5SULFATE ION
lig 36
SO4
A
37 5SULFATE ION
lig 37
IPA
A
38 4ISOPROPYL ALCOHOL
lig 38
IPA
A
39 4ISOPROPYL ALCOHOL
lig 39
SO4
B
50 5SULFATE ION