Analysis of Ligand-Protein Contacts in PDB entry:
3UBE


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 28 ligands in PDB entry 3UBE. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GAL
M
1 12BETA-D-GALACTOPYRANOSE
lig 2
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
GAL
M
3 11BETA-D-GALACTOPYRANOSE
lig 4
SIA
M
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 5
GAL
N
1 12BETA-D-GALACTOPYRANOSE
lig 6
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
GAL
N
3 11BETA-D-GALACTOPYRANOSE
lig 8
SIA
N
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 9
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
GAL
O
2 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
O
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
GAL
Q
2 11BETA-D-GALACTOPYRANOSE
lig 16
SIA
Q
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 17
GAL
R
1 12BETA-D-GALACTOPYRANOSE
lig 18
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
GAL
R
3 11BETA-D-GALACTOPYRANOSE
lig 20
SIA
R
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 21
NAG
A
334 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
A
335 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
A
336 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
C
334 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
E
333 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
SIA
G
401 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 27
NAG
J
561 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
K
641 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE