Analysis of Ligand-Protein Contacts in PDB entry:
3UBQ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 3UBQ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
N
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
GAL
N
2 11BETA-D-GALACTOPYRANOSE
lig 5
SIA
N
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 6
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
GAL
P
1 11BETA-D-GALACTOPYRANOSE
lig 9
SIA
P
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 10
GAL
Q
1 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
Q
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
A
332 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
D
261 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
E
341 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
G
411 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
G
431 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
G
451 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
I
521 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
I
531 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
I
541 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
K
621 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
K
641 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
K
651 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE