Analysis of Ligand-Protein Contacts in PDB entry:
3VAF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 16 ligands in PDB entry 3VAF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
BRU
P
4 205-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
lig 2
BRU
P
5 205-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
lig 3
BRU
E
4 205-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
lig 4
BRU
E
5 205-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
lig 5
DIO
A
401 61,4-DIETHYLENE DIOXIDE
lig 6
DIO
A
402 61,4-DIETHYLENE DIOXIDE
lig 7
SO4
A
403 5SULFATE ION
lig 8
SO4
A
404 5SULFATE ION
lig 9
GOL
A
405 6GLYCEROL
lig 10
CPQ
B
401 27N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMI
lig 11
DIO
B
402 61,4-DIETHYLENE DIOXIDE
lig 12
DIO
B
403 61,4-DIETHYLENE DIOXIDE
lig 13
SO4
B
404 5SULFATE ION
lig 14
SO4
B
405 5SULFATE ION
lig 15
SO4
B
406 5SULFATE ION
lig 16
SO4
P
101 5SULFATE ION