Analysis of Ligand-Protein Contacts in PDB entry:
3VD4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 95 ligands in PDB entry 3VD4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MG
A
3001 1MAGNESIUM ION
lig 2
MG
A
3002 1MAGNESIUM ION
lig 3
NA
A
3101 1SODIUM ION
lig 4
NA
A
3102 1SODIUM ION
lig 5
NA
A
3103 1SODIUM ION
lig 6
DMS
A
8001 4DIMETHYL SULFOXIDE
lig 7
DMS
A
8002 4DIMETHYL SULFOXIDE
lig 8
DMS
A
8003 4DIMETHYL SULFOXIDE
lig 9
DMS
A
8004 4DIMETHYL SULFOXIDE
lig 10
DMS
A
8005 4DIMETHYL SULFOXIDE
lig 11
DMS
A
8006 4DIMETHYL SULFOXIDE
lig 12
DMS
A
8007 4DIMETHYL SULFOXIDE
lig 13
DMS
A
8008 4DIMETHYL SULFOXIDE
lig 14
DMS
A
8009 4DIMETHYL SULFOXIDE
lig 15
DMS
A
8010 4DIMETHYL SULFOXIDE
lig 16
DMS
A
8011 4DIMETHYL SULFOXIDE
lig 17
DMS
A
8012 4DIMETHYL SULFOXIDE
lig 18
DMS
A
8013 4DIMETHYL SULFOXIDE
lig 19
DMS
A
8014 4DIMETHYL SULFOXIDE
lig 20
DMS
A
8015 4DIMETHYL SULFOXIDE
lig 21
IPT
A
2001 151-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS
lig 22
DMS
A
8016 4DIMETHYL SULFOXIDE
lig 23
DMS
A
8017 4DIMETHYL SULFOXIDE
lig 24
MG
B
3001 1MAGNESIUM ION
lig 25
MG
B
3002 1MAGNESIUM ION
lig 26
MG
B
3007 1MAGNESIUM ION
lig 27
NA
B
3101 1SODIUM ION
lig 28
NA
B
3102 1SODIUM ION
lig 29
NA
B
3103 1SODIUM ION
lig 30
NA
B
3104 1SODIUM ION
lig 31
DMS
B
8001 4DIMETHYL SULFOXIDE
lig 32
DMS
B
8002 4DIMETHYL SULFOXIDE
lig 33
DMS
B
8003 4DIMETHYL SULFOXIDE
lig 34
DMS
B
8004 4DIMETHYL SULFOXIDE
lig 35
DMS
B
8005 4DIMETHYL SULFOXIDE
lig 36
DMS
B
8006 4DIMETHYL SULFOXIDE
lig 37
DMS
B
8007 4DIMETHYL SULFOXIDE
lig 38
DMS
B
8008 4DIMETHYL SULFOXIDE
lig 39
DMS
B
8009 4DIMETHYL SULFOXIDE
lig 40
DMS
B
8010 4DIMETHYL SULFOXIDE
lig 41
DMS
B
8011 4DIMETHYL SULFOXIDE
lig 42
DMS
B
8012 4DIMETHYL SULFOXIDE
lig 43
DMS
B
8013 4DIMETHYL SULFOXIDE
lig 44
DMS
B
8014 4DIMETHYL SULFOXIDE
lig 45
DMS
B
8015 4DIMETHYL SULFOXIDE
lig 46
IPT
B
2001 151-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS
lig 47
DMS
B
8016 4DIMETHYL SULFOXIDE
lig 48
DMS
B
8017 4DIMETHYL SULFOXIDE
lig 49
MG
C
3001 1MAGNESIUM ION
lig 50
MG
C
3002 1MAGNESIUM ION
lig 51
NA
C
3101 1SODIUM ION
lig 52
NA
C
3102 1SODIUM ION
lig 53
NA
C
3103 1SODIUM ION
lig 54
NA
C
3104 1SODIUM ION
lig 55
DMS
C
8001 4DIMETHYL SULFOXIDE
lig 56
DMS
C
8002 4DIMETHYL SULFOXIDE
lig 57
DMS
C
8003 4DIMETHYL SULFOXIDE
lig 58
DMS
C
8004 4DIMETHYL SULFOXIDE
lig 59
DMS
C
8005 4DIMETHYL SULFOXIDE
lig 60
DMS
C
8006 4DIMETHYL SULFOXIDE
lig 61
DMS
C
8007 4DIMETHYL SULFOXIDE
lig 62
DMS
C
8008 4DIMETHYL SULFOXIDE
lig 63
DMS
C
8009 4DIMETHYL SULFOXIDE
lig 64
DMS
C
8010 4DIMETHYL SULFOXIDE
lig 65
DMS
C
8011 4DIMETHYL SULFOXIDE
lig 66
DMS
C
8012 4DIMETHYL SULFOXIDE
lig 67
DMS
C
8013 4DIMETHYL SULFOXIDE
lig 68
DMS
C
8014 4DIMETHYL SULFOXIDE
lig 69
DMS
C
8015 4DIMETHYL SULFOXIDE
lig 70
DMS
C
8016 4DIMETHYL SULFOXIDE
lig 71
DMS
C
8017 4DIMETHYL SULFOXIDE
lig 72
IPT
C
2001 151-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS
lig 73
DMS
C
8018 4DIMETHYL SULFOXIDE
lig 74
DMS
C
8019 4DIMETHYL SULFOXIDE
lig 75
MG
D
3001 1MAGNESIUM ION
lig 76
MG
D
3002 1MAGNESIUM ION
lig 77
NA
D
3101 1SODIUM ION
lig 78
NA
D
3102 1SODIUM ION
lig 79
NA
D
3103 1SODIUM ION
lig 80
DMS
D
8001 4DIMETHYL SULFOXIDE
lig 81
DMS
D
8002 4DIMETHYL SULFOXIDE
lig 82
DMS
D
8003 4DIMETHYL SULFOXIDE
lig 83
DMS
D
8004 4DIMETHYL SULFOXIDE
lig 84
DMS
D
8005 4DIMETHYL SULFOXIDE
lig 85
DMS
D
8006 4DIMETHYL SULFOXIDE
lig 86
DMS
D
8007 4DIMETHYL SULFOXIDE
lig 87
DMS
D
8008 4DIMETHYL SULFOXIDE
lig 88
DMS
D
8009 4DIMETHYL SULFOXIDE
lig 89
DMS
D
8010 4DIMETHYL SULFOXIDE
lig 90
DMS
D
8011 4DIMETHYL SULFOXIDE
lig 91
DMS
D
8012 4DIMETHYL SULFOXIDE
lig 92
DMS
D
8013 4DIMETHYL SULFOXIDE
lig 93
DMS
D
8014 4DIMETHYL SULFOXIDE
lig 94
DMS
D
8015 4DIMETHYL SULFOXIDE
lig 95
IPT
D
2001 151-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS