Analysis of Ligand-Protein Contacts in PDB entry:
3VDB

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 104 ligands in PDB entry 3VDB. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	149	A	2001	12	D-GALACTONOLACTONE
lig 2	MG	A	3001	1	MAGNESIUM ION
lig 3	MG	A	3002	1	MAGNESIUM ION
lig 4	NA	A	3101	1	SODIUM ION
lig 5	NA	A	3102	1	SODIUM ION
lig 6	NA	A	3103	1	SODIUM ION
lig 7	DMS	A	8001	4	DIMETHYL SULFOXIDE
lig 8	DMS	A	8002	4	DIMETHYL SULFOXIDE
lig 9	DMS	A	8003	4	DIMETHYL SULFOXIDE
lig 10	DMS	A	8004	4	DIMETHYL SULFOXIDE
lig 11	DMS	A	8005	4	DIMETHYL SULFOXIDE
lig 12	DMS	A	8006	4	DIMETHYL SULFOXIDE
lig 13	DMS	A	8007	4	DIMETHYL SULFOXIDE
lig 14	DMS	A	8008	4	DIMETHYL SULFOXIDE
lig 15	DMS	A	8009	4	DIMETHYL SULFOXIDE
lig 16	DMS	A	8010	4	DIMETHYL SULFOXIDE
lig 17	DMS	A	8011	4	DIMETHYL SULFOXIDE
lig 18	DMS	A	8012	4	DIMETHYL SULFOXIDE
lig 19	DMS	A	8013	4	DIMETHYL SULFOXIDE
lig 20	DMS	A	8014	4	DIMETHYL SULFOXIDE
lig 21	DMS	A	8015	4	DIMETHYL SULFOXIDE
lig 22	DMS	A	8016	4	DIMETHYL SULFOXIDE
lig 23	DMS	A	8017	4	DIMETHYL SULFOXIDE
lig 24	DMS	A	8018	4	DIMETHYL SULFOXIDE
lig 25	149	B	2001	12	D-GALACTONOLACTONE
lig 26	MG	B	3001	1	MAGNESIUM ION
lig 27	MG	B	3002	1	MAGNESIUM ION
lig 28	MG	B	3007	1	MAGNESIUM ION
lig 29	NA	B	3101	1	SODIUM ION
lig 30	NA	B	3102	1	SODIUM ION
lig 31	NA	B	3103	1	SODIUM ION
lig 32	NA	B	3104	1	SODIUM ION
lig 33	DMS	B	8001	4	DIMETHYL SULFOXIDE
lig 34	DMS	B	8002	4	DIMETHYL SULFOXIDE
lig 35	DMS	B	8003	4	DIMETHYL SULFOXIDE
lig 36	DMS	B	8004	4	DIMETHYL SULFOXIDE
lig 37	DMS	B	8005	4	DIMETHYL SULFOXIDE
lig 38	DMS	B	8006	4	DIMETHYL SULFOXIDE
lig 39	DMS	B	8007	4	DIMETHYL SULFOXIDE
lig 40	DMS	B	8008	4	DIMETHYL SULFOXIDE
lig 41	DMS	B	8009	4	DIMETHYL SULFOXIDE
lig 42	DMS	B	8010	4	DIMETHYL SULFOXIDE
lig 43	DMS	B	8011	4	DIMETHYL SULFOXIDE
lig 44	DMS	B	8012	4	DIMETHYL SULFOXIDE
lig 45	DMS	B	8013	4	DIMETHYL SULFOXIDE
lig 46	DMS	B	8014	4	DIMETHYL SULFOXIDE
lig 47	DMS	B	8015	4	DIMETHYL SULFOXIDE
lig 48	DMS	B	8016	4	DIMETHYL SULFOXIDE
lig 49	DMS	B	8017	4	DIMETHYL SULFOXIDE
lig 50	DMS	B	8018	4	DIMETHYL SULFOXIDE
lig 51	DMS	B	8019	4	DIMETHYL SULFOXIDE
lig 52	DMS	B	8020	4	DIMETHYL SULFOXIDE
lig 53	DMS	B	8021	4	DIMETHYL SULFOXIDE
lig 54	DMS	B	8022	4	DIMETHYL SULFOXIDE
lig 55	DMS	B	8023	4	DIMETHYL SULFOXIDE
lig 56	DMS	C	8001	4	DIMETHYL SULFOXIDE
lig 57	149	C	2001	12	D-GALACTONOLACTONE
lig 58	MG	C	3001	1	MAGNESIUM ION
lig 59	MG	C	3002	1	MAGNESIUM ION
lig 60	NA	C	3101	1	SODIUM ION
lig 61	NA	C	3102	1	SODIUM ION
lig 62	NA	C	3103	1	SODIUM ION
lig 63	DMS	C	8002	4	DIMETHYL SULFOXIDE
lig 64	DMS	C	8003	4	DIMETHYL SULFOXIDE
lig 65	DMS	C	8004	4	DIMETHYL SULFOXIDE
lig 66	DMS	C	8005	4	DIMETHYL SULFOXIDE
lig 67	DMS	C	8006	4	DIMETHYL SULFOXIDE
lig 68	DMS	C	8007	4	DIMETHYL SULFOXIDE
lig 69	DMS	C	8008	4	DIMETHYL SULFOXIDE
lig 70	DMS	C	8009	4	DIMETHYL SULFOXIDE
lig 71	DMS	C	8010	4	DIMETHYL SULFOXIDE
lig 72	DMS	C	8011	4	DIMETHYL SULFOXIDE
lig 73	DMS	C	8012	4	DIMETHYL SULFOXIDE
lig 74	DMS	C	8013	4	DIMETHYL SULFOXIDE
lig 75	DMS	C	8014	4	DIMETHYL SULFOXIDE
lig 76	DMS	C	8015	4	DIMETHYL SULFOXIDE
lig 77	DMS	C	8016	4	DIMETHYL SULFOXIDE
lig 78	DMS	C	8017	4	DIMETHYL SULFOXIDE
lig 79	DMS	C	8018	4	DIMETHYL SULFOXIDE
lig 80	DMS	C	8019	4	DIMETHYL SULFOXIDE
lig 81	DMS	C	8020	4	DIMETHYL SULFOXIDE
lig 82	DMS	C	8021	4	DIMETHYL SULFOXIDE
lig 83	DMS	D	8001	4	DIMETHYL SULFOXIDE
lig 84	149	D	2001	12	D-GALACTONOLACTONE
lig 85	MG	D	3001	1	MAGNESIUM ION
lig 86	MG	D	3002	1	MAGNESIUM ION
lig 87	NA	D	3101	1	SODIUM ION
lig 88	NA	D	3102	1	SODIUM ION
lig 89	NA	D	3103	1	SODIUM ION
lig 90	NA	D	3104	1	SODIUM ION
lig 91	DMS	D	8002	4	DIMETHYL SULFOXIDE
lig 92	DMS	D	8003	4	DIMETHYL SULFOXIDE
lig 93	DMS	D	8004	4	DIMETHYL SULFOXIDE
lig 94	DMS	D	8005	4	DIMETHYL SULFOXIDE
lig 95	DMS	D	8006	4	DIMETHYL SULFOXIDE
lig 96	DMS	D	8007	4	DIMETHYL SULFOXIDE
lig 97	DMS	D	8008	4	DIMETHYL SULFOXIDE
lig 98	DMS	D	8009	4	DIMETHYL SULFOXIDE
lig 99	DMS	D	8010	4	DIMETHYL SULFOXIDE
lig 100	DMS	D	8011	4	DIMETHYL SULFOXIDE
lig 101	DMS	D	8012	4	DIMETHYL SULFOXIDE
lig 102	DMS	D	8013	4	DIMETHYL SULFOXIDE
lig 103	DMS	D	8014	4	DIMETHYL SULFOXIDE
lig 104	DMS	D	8015	4	DIMETHYL SULFOXIDE

Analysis of Ligand-Protein Contacts in PDB entry: 3VDB

Analysis of Ligand-Protein Contacts in PDB entry:
3VDB