Analysis of Ligand-Protein Contacts in PDB entry:
3VDC

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 68 ligands in PDB entry 3VDC. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	IPT	A	2001	15	1-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS
lig 2	MG	A	3001	1	MAGNESIUM ION
lig 3	MG	A	3002	1	MAGNESIUM ION
lig 4	NA	A	3101	1	SODIUM ION
lig 5	NA	A	3102	1	SODIUM ION
lig 6	NA	A	3103	1	SODIUM ION
lig 7	DMS	A	8001	4	DIMETHYL SULFOXIDE
lig 8	DMS	A	8002	4	DIMETHYL SULFOXIDE
lig 9	DMS	A	8003	4	DIMETHYL SULFOXIDE
lig 10	DMS	A	8004	4	DIMETHYL SULFOXIDE
lig 11	DMS	A	8005	4	DIMETHYL SULFOXIDE
lig 12	DMS	A	8006	4	DIMETHYL SULFOXIDE
lig 13	DMS	A	8007	4	DIMETHYL SULFOXIDE
lig 14	DMS	A	8008	4	DIMETHYL SULFOXIDE
lig 15	DMS	A	8009	4	DIMETHYL SULFOXIDE
lig 16	DMS	A	8010	4	DIMETHYL SULFOXIDE
lig 17	IPT	B	2001	15	1-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS
lig 18	MG	B	3001	1	MAGNESIUM ION
lig 19	MG	B	3002	1	MAGNESIUM ION
lig 20	NA	B	3101	1	SODIUM ION
lig 21	NA	B	3102	1	SODIUM ION
lig 22	NA	B	3104	1	SODIUM ION
lig 23	DMS	B	8001	4	DIMETHYL SULFOXIDE
lig 24	DMS	B	8002	4	DIMETHYL SULFOXIDE
lig 25	DMS	B	8003	4	DIMETHYL SULFOXIDE
lig 26	DMS	B	8004	4	DIMETHYL SULFOXIDE
lig 27	DMS	B	8005	4	DIMETHYL SULFOXIDE
lig 28	DMS	B	8006	4	DIMETHYL SULFOXIDE
lig 29	DMS	B	8007	4	DIMETHYL SULFOXIDE
lig 30	DMS	B	8008	4	DIMETHYL SULFOXIDE
lig 31	DMS	B	8009	4	DIMETHYL SULFOXIDE
lig 32	DMS	B	8010	4	DIMETHYL SULFOXIDE
lig 33	DMS	B	8011	4	DIMETHYL SULFOXIDE
lig 34	DMS	B	8012	4	DIMETHYL SULFOXIDE
lig 35	IPT	C	2001	15	1-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS
lig 36	MG	C	3001	1	MAGNESIUM ION
lig 37	MG	C	3002	1	MAGNESIUM ION
lig 38	NA	C	3101	1	SODIUM ION
lig 39	NA	C	3102	1	SODIUM ION
lig 40	DMS	C	8001	4	DIMETHYL SULFOXIDE
lig 41	DMS	C	8002	4	DIMETHYL SULFOXIDE
lig 42	DMS	C	8003	4	DIMETHYL SULFOXIDE
lig 43	DMS	C	8004	4	DIMETHYL SULFOXIDE
lig 44	DMS	C	8005	4	DIMETHYL SULFOXIDE
lig 45	DMS	C	8006	4	DIMETHYL SULFOXIDE
lig 46	DMS	C	8007	4	DIMETHYL SULFOXIDE
lig 47	DMS	C	8008	4	DIMETHYL SULFOXIDE
lig 48	DMS	C	8009	4	DIMETHYL SULFOXIDE
lig 49	DMS	C	8010	4	DIMETHYL SULFOXIDE
lig 50	DMS	C	8011	4	DIMETHYL SULFOXIDE
lig 51	IPT	D	2001	15	1-METHYLETHYL 1-THIO-BETA-D-GALACTOPYRANOS
lig 52	MG	D	3001	1	MAGNESIUM ION
lig 53	MG	D	3002	1	MAGNESIUM ION
lig 54	NA	D	3101	1	SODIUM ION
lig 55	NA	D	3102	1	SODIUM ION
lig 56	DMS	D	8001	4	DIMETHYL SULFOXIDE
lig 57	DMS	D	8002	4	DIMETHYL SULFOXIDE
lig 58	DMS	D	8003	4	DIMETHYL SULFOXIDE
lig 59	DMS	D	8004	4	DIMETHYL SULFOXIDE
lig 60	DMS	D	8005	4	DIMETHYL SULFOXIDE
lig 61	DMS	D	8006	4	DIMETHYL SULFOXIDE
lig 62	DMS	D	8007	4	DIMETHYL SULFOXIDE
lig 63	DMS	D	8008	4	DIMETHYL SULFOXIDE
lig 64	DMS	D	8009	4	DIMETHYL SULFOXIDE
lig 65	DMS	D	8010	4	DIMETHYL SULFOXIDE
lig 66	DMS	D	8011	4	DIMETHYL SULFOXIDE
lig 67	DMS	D	8012	4	DIMETHYL SULFOXIDE
lig 68	DMS	D	8013	4	DIMETHYL SULFOXIDE

Analysis of Ligand-Protein Contacts in PDB entry: 3VDC

Analysis of Ligand-Protein Contacts in PDB entry:
3VDC