Analysis of Ligand-Protein Contacts in PDB entry:
3VFJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 26 ligands in PDB entry 3VFJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CCS
A
374 10CARBOXYMETHYLATED CYSTEINE
lig 2
DAL
A
376 5D-ALANINE
lig 3
DAL
A
377 6D-ALANINE
lig 4
GHP
G
1 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 5
3MY
G
2 133-CHLORO-D-TYROSINE
lig 6
3FG
G
3 12(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC AC
lig 7
GHP
G
4 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 8
GHP
G
5 11(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
lig 9
OMX
G
6 13(BETAR)-BETA-HYDROXY-L-TYROSINE
lig 10
3FG
G
7 13(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC AC
lig 11
ZN
A
401 1ZINC ION
lig 12
ZN
A
402 1ZINC ION
lig 13
ZN
A
403 1ZINC ION
lig 14
ZN
A
404 1ZINC ION
lig 15
ZN
A
405 1ZINC ION
lig 16
ZN
A
406 1ZINC ION
lig 17
ZN
A
407 1ZINC ION
lig 18
ZN
A
408 1ZINC ION
lig 19
ACT
A
409 4ACETATE ION
lig 20
ACT
A
410 4ACETATE ION
lig 21
CAC
A
411 5CACODYLATE ION
lig 22
GCS
G
8 112-AMINO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
T55
G
9 118-METHYLNONANOIC ACID
lig 24
NAG
G
10 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
MAN
G
11 11ALPHA-D-MANNOPYRANOSE
lig 26
CAC
G
104 5CACODYLATE ION