Analysis of Ligand-Protein Contacts in PDB entry:
3VKM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 34 ligands in PDB entry 3VKM. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
BGC
C
1 12BETA-D-GLUCOPYRANOSE
lig 2
GAL
C
2 11BETA-D-GALACTOPYRANOSE
lig 3
SIA
C
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 4
BGC
D
1 12BETA-D-GLUCOPYRANOSE
lig 5
GAL
D
2 11BETA-D-GALACTOPYRANOSE
lig 6
BGC
E
1 12BETA-D-GLUCOPYRANOSE
lig 7
GAL
E
2 11BETA-D-GALACTOPYRANOSE
lig 8
SIA
E
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 9
BGC
F
1 12BETA-D-GLUCOPYRANOSE
lig 10
GAL
F
2 11BETA-D-GALACTOPYRANOSE
lig 11
EDO
A
406 41,2-ETHANEDIOL
lig 12
EDO
A
407 41,2-ETHANEDIOL
lig 13
EDO
A
408 41,2-ETHANEDIOL
lig 14
EDO
A
409 41,2-ETHANEDIOL
lig 15
EDO
A
410 41,2-ETHANEDIOL
lig 16
EDO
A
411 41,2-ETHANEDIOL
lig 17
EDO
A
412 41,2-ETHANEDIOL
lig 18
EDO
A
413 41,2-ETHANEDIOL
lig 19
EDO
A
414 41,2-ETHANEDIOL
lig 20
EDO
A
415 41,2-ETHANEDIOL
lig 21
EDO
A
416 41,2-ETHANEDIOL
lig 22
EDO
B
406 41,2-ETHANEDIOL
lig 23
EDO
B
407 41,2-ETHANEDIOL
lig 24
EDO
B
408 41,2-ETHANEDIOL
lig 25
EDO
B
409 41,2-ETHANEDIOL
lig 26
EDO
B
410 41,2-ETHANEDIOL
lig 27
EDO
B
411 41,2-ETHANEDIOL
lig 28
EDO
B
412 41,2-ETHANEDIOL
lig 29
EDO
B
413 41,2-ETHANEDIOL
lig 30
EDO
B
414 41,2-ETHANEDIOL
lig 31
EDO
B
415 41,2-ETHANEDIOL
lig 32
EDO
B
416 41,2-ETHANEDIOL
lig 33
EDO
B
417 41,2-ETHANEDIOL
lig 34
EDO
B
418 41,2-ETHANEDIOL