Analysis of Ligand-Protein Contacts in PDB entry:
3VRD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 10 ligands in PDB entry 3VRD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
CSS
B
161 7S-MERCAPTOCYSTEINE
lig 2
CSS
B
337 7S-MERCAPTOCYSTEINE
lig 3
HEC
A
201 43HEME C
lig 4
HEC
A
202 43HEME C
lig 5
GOL
A
203 6GLYCEROL
lig 6
GOL
A
204 6GLYCEROL
lig 7
NO3
A
205 4NITRATE ION
lig 8
FAD
B
501 53FLAVIN-ADENINE DINUCLEOTIDE
lig 9
GOL
B
502 6GLYCEROL
lig 10
NO3
B
503 4NITRATE ION