Analysis of Ligand-Protein Contacts in PDB entry:
4DUG


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 30 ligands in PDB entry 4DUG. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
432 11PHOSPHOTHREONINE
lig 2
TPO
B
432 11PHOSPHOTHREONINE
lig 3
TPO
C
432 11PHOSPHOTHREONINE
lig 4
TPO
E
432 11PHOSPHOTHREONINE
lig 5
TPO
F
432 11PHOSPHOTHREONINE
lig 6
MG
A
801 1MAGNESIUM ION
lig 7
ATP
A
802 31ADENOSINE-5'-TRIPHOSPHATE
lig 8
ATP
A
803 31ADENOSINE-5'-TRIPHOSPHATE
lig 9
MG
A
804 1MAGNESIUM ION
lig 10
MG
B
601 1MAGNESIUM ION
lig 11
ATP
B
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 12
ATP
B
603 31ADENOSINE-5'-TRIPHOSPHATE
lig 13
MG
B
604 1MAGNESIUM ION
lig 14
MG
C
601 1MAGNESIUM ION
lig 15
ATP
C
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 16
ATP
C
603 31ADENOSINE-5'-TRIPHOSPHATE
lig 17
MG
C
604 1MAGNESIUM ION
lig 18
PO4
C
605 5PHOSPHATE ION
lig 19
MG
D
601 1MAGNESIUM ION
lig 20
ATP
D
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 21
ATP
D
603 31ADENOSINE-5'-TRIPHOSPHATE
lig 22
MG
D
604 1MAGNESIUM ION
lig 23
MG
E
601 1MAGNESIUM ION
lig 24
ATP
E
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 25
ATP
E
603 31ADENOSINE-5'-TRIPHOSPHATE
lig 26
MG
E
604 1MAGNESIUM ION
lig 27
MG
F
601 1MAGNESIUM ION
lig 28
ATP
F
602 31ADENOSINE-5'-TRIPHOSPHATE
lig 29
ATP
F
603 31ADENOSINE-5'-TRIPHOSPHATE
lig 30
MG
F
604 1MAGNESIUM ION