Analysis of Ligand-Protein Contacts in PDB entry:
4GZW


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 50 ligands in PDB entry 4GZW. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
GAL
E
2 11BETA-D-GALACTOPYRANOSE
lig 3
SIA
E
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
G
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
GAL
G
2 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
G
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 15
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 16
GAL
I
1 12BETA-D-GALACTOPYRANOSE
lig 17
SIA
I
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 18
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 21
MAN
J
4 11ALPHA-D-MANNOPYRANOSE
lig 22
MAN
J
5 11ALPHA-D-MANNOPYRANOSE
lig 23
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 28
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 29
MAN
L
5 11ALPHA-D-MANNOPYRANOSE
lig 30
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
FUC
M
3 10ALPHA-L-FUCOPYRANOSE
lig 33
NAG
A
509 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
A
510 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
A
511 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
A
512 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
CA
A
513 1CALCIUM ION
lig 38
NAG
B
508 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
B
509 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
B
510 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
B
511 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
CA
B
512 1CALCIUM ION
lig 43
NAG
C
810 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
NAG
C
811 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
CA
C
812 1CALCIUM ION
lig 46
CA
D
501 1CALCIUM ION
lig 47
SIA
D
502 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 48
NAG
D
508 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
NAG
D
512 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
CA
D
513 1CALCIUM ION