Analysis of Ligand-Protein Contacts in PDB entry:
4NEC


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 44 ligands in PDB entry 4NEC. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DSN
E
1 6D-SERINE
lig 2
N2C
E
3 8N,S-DIMETHYLCYSTEINE
lig 3
MVA
E
4 8N-METHYLVALINE
lig 4
DSN
E
5 6D-SERINE
lig 5
NCY
E
7 7N-METHYLCYSTEINE
lig 6
MVA
E
8 8N-METHYLVALINE
lig 7
DSN
F
1 6D-SERINE
lig 8
N2C
F
3 8N,S-DIMETHYLCYSTEINE
lig 9
MVA
F
4 8N-METHYLVALINE
lig 10
DSN
F
5 6D-SERINE
lig 11
NCY
F
7 7N-METHYLCYSTEINE
lig 12
MVA
F
8 8N-METHYLVALINE
lig 13
DSN
G
1 6D-SERINE
lig 14
N2C
G
3 8N,S-DIMETHYLCYSTEINE
lig 15
MVA
G
4 8N-METHYLVALINE
lig 16
DSN
G
5 6D-SERINE
lig 17
NCY
G
7 7N-METHYLCYSTEINE
lig 18
MVA
G
8 8N-METHYLVALINE
lig 19
DSN
H
1 6D-SERINE
lig 20
N2C
H
3 8N,S-DIMETHYLCYSTEINE
lig 21
MVA
H
4 8N-METHYLVALINE
lig 22
DSN
H
5 6D-SERINE
lig 23
NCY
H
7 7N-METHYLCYSTEINE
lig 24
MVA
H
8 8N-METHYLVALINE
lig 25
SAH
A
401 26S-ADENOSYL-L-HOMOCYSTEINE
lig 26
PGE
A
402 7TRIETHYLENE GLYCOL
lig 27
NA
A
403 1SODIUM ION
lig 28
NA
A
404 1SODIUM ION
lig 29
QUI
E
101 122-CARBOXYQUINOXALINE
lig 30
QUI
E
102 122-CARBOXYQUINOXALINE
lig 31
SAH
B
401 26S-ADENOSYL-L-HOMOCYSTEINE
lig 32
ACT
B
402 4ACETATE ION
lig 33
QUI
F
101 122-CARBOXYQUINOXALINE
lig 34
QUI
F
102 122-CARBOXYQUINOXALINE
lig 35
SAH
C
401 26S-ADENOSYL-L-HOMOCYSTEINE
lig 36
NA
C
402 1SODIUM ION
lig 37
QUI
G
101 122-CARBOXYQUINOXALINE
lig 38
QUI
G
102 122-CARBOXYQUINOXALINE
lig 39
SAH
D
401 26S-ADENOSYL-L-HOMOCYSTEINE
lig 40
15P
D
402 9POLYETHYLENE GLYCOL (N=34)
lig 41
15P
D
403 18POLYETHYLENE GLYCOL (N=34)
lig 42
PGE
D
404 4TRIETHYLENE GLYCOL
lig 43
QUI
H
101 122-CARBOXYQUINOXALINE
lig 44
QUI
H
102 122-CARBOXYQUINOXALINE