Analysis of Ligand-Protein Contacts in PDB entry:
4PBU


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 152 ligands in PDB entry 4PBU. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OEX
A
601 10CA-MN4-O5 CLUSTER
lig 2
FE2
A
602 1FE (II) ION
lig 3
CL
A
603 1CHLORIDE ION
lig 4
CL
A
604 1CHLORIDE ION
lig 5
BCT
A
605 4BICARBONATE ION
lig 6
CLA
A
606 65CHLOROPHYLL A
lig 7
CLA
A
607 65CHLOROPHYLL A
lig 8
PHO
A
608 64PHEOPHYTIN A
lig 9
CLA
A
609 65CHLOROPHYLL A
lig 10
BCR
A
610 40BETA-CAROTENE
lig 11
PL9
A
611 55 BENZOQUINONE
lig 12
SQD
A
612 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 13
SQD
A
613 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 14
CLA
A
614 65CHLOROPHYLL A
lig 15
LHG
A
615 421,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 16
CA
B
601 1CALCIUM ION
lig 17
CLA
B
602 65CHLOROPHYLL A
lig 18
CLA
B
603 65CHLOROPHYLL A
lig 19
CLA
B
604 65CHLOROPHYLL A
lig 20
CLA
B
605 65CHLOROPHYLL A
lig 21
CLA
B
606 65CHLOROPHYLL A
lig 22
CLA
B
607 65CHLOROPHYLL A
lig 23
CLA
B
608 65CHLOROPHYLL A
lig 24
CLA
B
609 65CHLOROPHYLL A
lig 25
CLA
B
610 65CHLOROPHYLL A
lig 26
CLA
B
611 65CHLOROPHYLL A
lig 27
CLA
B
612 65CHLOROPHYLL A
lig 28
CLA
B
613 65CHLOROPHYLL A
lig 29
CLA
B
614 65CHLOROPHYLL A
lig 30
CLA
B
615 65CHLOROPHYLL A
lig 31
CLA
B
616 65CHLOROPHYLL A
lig 32
CLA
B
617 65CHLOROPHYLL A
lig 33
BCR
B
618 40BETA-CAROTENE
lig 34
BCR
B
619 40BETA-CAROTENE
lig 35
BCR
B
620 40BETA-CAROTENE
lig 36
LHG
B
621 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 37
BCR
B
622 40BETA-CAROTENE
lig 38
CLA
C
501 65CHLOROPHYLL A
lig 39
CLA
C
502 65CHLOROPHYLL A
lig 40
CLA
C
503 65CHLOROPHYLL A
lig 41
CLA
C
504 65CHLOROPHYLL A
lig 42
CLA
C
505 65CHLOROPHYLL A
lig 43
CLA
C
506 65CHLOROPHYLL A
lig 44
CLA
C
507 65CHLOROPHYLL A
lig 45
CLA
C
508 65CHLOROPHYLL A
lig 46
CLA
C
509 65CHLOROPHYLL A
lig 47
CLA
C
510 65CHLOROPHYLL A
lig 48
CLA
C
511 65CHLOROPHYLL A
lig 49
CLA
C
512 65CHLOROPHYLL A
lig 50
CLA
C
513 65CHLOROPHYLL A
lig 51
BCR
C
514 40BETA-CAROTENE
lig 52
BCR
C
515 40BETA-CAROTENE
lig 53
DGD
C
516 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 54
DGD
C
517 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 55
DGD
C
518 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 56
PHO
D
401 64PHEOPHYTIN A
lig 57
CLA
D
402 65CHLOROPHYLL A
lig 58
CLA
D
403 65CHLOROPHYLL A
lig 59
BCR
D
404 40BETA-CAROTENE
lig 60
PL9
D
405 55 BENZOQUINONE
lig 61
DGD
D
406 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 62
LHG
D
407 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 63
LHG
D
408 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 64
LHG
D
409 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 65
HEM
E
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 66
SQD
F
101 43 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 67
CA
F
102 1CALCIUM ION
lig 68
BCR
H
101 40BETA-CAROTENE
lig 69
DGD
H
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 70
BCR
K
101 40BETA-CAROTENE
lig 71
SQD
L
101 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 72
CA
O
301 1CALCIUM ION
lig 73
BCR
T
101 40BETA-CAROTENE
lig 74
BCR
T
102 40BETA-CAROTENE
lig 75
CL
V
201 1CHLORIDE ION
lig 76
HEM
V
202 43PROTOPORPHYRIN IX CONTAINING FE
lig 77
BCR
Y
101 40BETA-CAROTENE
lig 78
OEX
a
401 10CA-MN4-O5 CLUSTER
lig 79
SQD
a
402 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 80
FE2
a
403 1FE (II) ION
lig 81
CL
a
404 1CHLORIDE ION
lig 82
CL
a
405 1CHLORIDE ION
lig 83
CLA
a
406 65CHLOROPHYLL A
lig 84
CLA
a
407 65CHLOROPHYLL A
lig 85
CLA
a
408 65CHLOROPHYLL A
lig 86
BCR
a
409 40BETA-CAROTENE
lig 87
PL9
a
410 55 BENZOQUINONE
lig 88
SQD
a
411 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 89
PHO
a
412 64PHEOPHYTIN A
lig 90
LHG
a
413 421,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 91
BCT
a
414 4BICARBONATE ION
lig 92
CA
b
601 1CALCIUM ION
lig 93
CLA
b
602 65CHLOROPHYLL A
lig 94
CLA
b
603 65CHLOROPHYLL A
lig 95
CLA
b
604 65CHLOROPHYLL A
lig 96
CLA
b
605 65CHLOROPHYLL A
lig 97
CLA
b
606 65CHLOROPHYLL A
lig 98
CLA
b
607 65CHLOROPHYLL A
lig 99
CLA
b
608 65CHLOROPHYLL A
lig 100
CLA
b
609 65CHLOROPHYLL A
lig 101
CLA
b
610 65CHLOROPHYLL A
lig 102
CLA
b
611 65CHLOROPHYLL A
lig 103
CLA
b
612 65CHLOROPHYLL A
lig 104
CLA
b
613 65CHLOROPHYLL A
lig 105
CLA
b
614 65CHLOROPHYLL A
lig 106
CLA
b
615 65CHLOROPHYLL A
lig 107
CLA
b
616 65CHLOROPHYLL A
lig 108
CLA
b
617 65CHLOROPHYLL A
lig 109
BCR
b
618 40BETA-CAROTENE
lig 110
BCR
b
619 40BETA-CAROTENE
lig 111
LHG
b
620 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 112
CA
c
901 1CALCIUM ION
lig 113
CLA
c
902 65CHLOROPHYLL A
lig 114
CLA
c
903 65CHLOROPHYLL A
lig 115
CLA
c
904 65CHLOROPHYLL A
lig 116
CLA
c
905 65CHLOROPHYLL A
lig 117
CLA
c
906 65CHLOROPHYLL A
lig 118
CLA
c
907 65CHLOROPHYLL A
lig 119
CLA
c
908 65CHLOROPHYLL A
lig 120
CLA
c
909 65CHLOROPHYLL A
lig 121
CLA
c
910 65CHLOROPHYLL A
lig 122
CLA
c
911 65CHLOROPHYLL A
lig 123
CLA
c
912 65CHLOROPHYLL A
lig 124
CLA
c
913 65CHLOROPHYLL A
lig 125
CLA
c
914 65CHLOROPHYLL A
lig 126
BCR
c
915 40BETA-CAROTENE
lig 127
DGD
c
916 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 128
DGD
c
917 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 129
BCR
c
918 40BETA-CAROTENE
lig 130
CLA
d
401 65CHLOROPHYLL A
lig 131
PHO
d
402 64PHEOPHYTIN A
lig 132
CLA
d
403 65CHLOROPHYLL A
lig 133
CLA
d
404 65CHLOROPHYLL A
lig 134
PL9
d
405 55 BENZOQUINONE
lig 135
DGD
d
406 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 136
SQD
d
407 43 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 137
LHG
d
408 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 138
LHG
d
409 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 139
LHG
d
410 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 140
HEM
e
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 141
BCR
f
101 40BETA-CAROTENE
lig 142
CA
f
102 1CALCIUM ION
lig 143
BCR
h
101 40BETA-CAROTENE
lig 144
DGD
h
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 145
DGD
j
101 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 146
MG
j
102 1MAGNESIUM ION
lig 147
BCR
k
101 40BETA-CAROTENE
lig 148
BCR
k
102 40BETA-CAROTENE
lig 149
SQD
l
101 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 150
CA
o
301 1CALCIUM ION
lig 151
CL
v
201 1CHLORIDE ION
lig 152
HEM
v
202 43PROTOPORPHYRIN IX CONTAINING FE