Analysis of Ligand-Protein Contacts in PDB entry:
4YDD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 45 ligands in PDB entry 4YDD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SF4
A
1001 8IRON/SULFUR CLUSTER
lig 2
MO
A
1002 1MOLYBDENUM ATOM
lig 3
MGD
A
1003 47 DINUCLEOTIDE
lig 4
MD1
A
1004 47 ESTER GUANYLATE ESTER
lig 5
EDO
A
1005 41,2-ETHANEDIOL
lig 6
EDO
A
1006 41,2-ETHANEDIOL
lig 7
EDO
A
1007 41,2-ETHANEDIOL
lig 8
EDO
A
1008 41,2-ETHANEDIOL
lig 9
EDO
A
1009 41,2-ETHANEDIOL
lig 10
EDO
A
1010 41,2-ETHANEDIOL
lig 11
F3S
B
401 7FE3-S4 CLUSTER
lig 12
SF4
B
402 8IRON/SULFUR CLUSTER
lig 13
SF4
B
403 8IRON/SULFUR CLUSTER
lig 14
SF4
B
404 8IRON/SULFUR CLUSTER
lig 15
EDO
B
405 41,2-ETHANEDIOL
lig 16
EDO
B
406 41,2-ETHANEDIOL
lig 17
NA
B
407 1SODIUM ION
lig 18
SF4
C
1001 8IRON/SULFUR CLUSTER
lig 19
MO
C
1002 1MOLYBDENUM ATOM
lig 20
MGD
C
1003 47 DINUCLEOTIDE
lig 21
MD1
C
1004 47 ESTER GUANYLATE ESTER
lig 22
EDO
C
1005 41,2-ETHANEDIOL
lig 23
GOL
C
1006 6GLYCEROL
lig 24
EDO
C
1007 41,2-ETHANEDIOL
lig 25
PEG
C
1008 7DI(HYDROXYETHYL)ETHER
lig 26
F3S
D
401 7FE3-S4 CLUSTER
lig 27
SF4
D
402 8IRON/SULFUR CLUSTER
lig 28
SF4
D
403 8IRON/SULFUR CLUSTER
lig 29
SF4
D
404 8IRON/SULFUR CLUSTER
lig 30
EDO
D
405 41,2-ETHANEDIOL
lig 31
SF4
E
1001 8IRON/SULFUR CLUSTER
lig 32
MO
E
1002 1MOLYBDENUM ATOM
lig 33
MGD
E
1003 47 DINUCLEOTIDE
lig 34
MD1
E
1004 47 ESTER GUANYLATE ESTER
lig 35
EDO
E
1005 41,2-ETHANEDIOL
lig 36
EDO
E
1006 41,2-ETHANEDIOL
lig 37
EDO
E
1007 41,2-ETHANEDIOL
lig 38
EDO
E
1008 41,2-ETHANEDIOL
lig 39
EDO
E
1009 41,2-ETHANEDIOL
lig 40
EDO
E
1010 41,2-ETHANEDIOL
lig 41
F3S
F
401 7FE3-S4 CLUSTER
lig 42
SF4
F
402 8IRON/SULFUR CLUSTER
lig 43
SF4
F
403 8IRON/SULFUR CLUSTER
lig 44
SF4
F
404 8IRON/SULFUR CLUSTER
lig 45
EDO
F
405 41,2-ETHANEDIOL