Analysis of Ligand-Protein Contacts in PDB entry:
4D1J


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 4D1J. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DGJ
A
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 2
NA
A
601 1SODIUM ION
lig 3
NA
A
602 1SODIUM ION
lig 4
NA
A
603 1SODIUM ION
lig 5
NA
A
604 1SODIUM ION
lig 6
DGJ
B
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 7
NA
B
601 1SODIUM ION
lig 8
NA
B
602 1SODIUM ION
lig 9
DGJ
C
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 10
ACT
C
601 4ACETATE ION
lig 11
ACT
C
602 4ACETATE ION
lig 12
DGJ
D
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 13
NA
D
601 1SODIUM ION
lig 14
NA
D
602 1SODIUM ION
lig 15
NA
D
603 1SODIUM ION
lig 16
NA
D
604 1SODIUM ION
lig 17
ACT
D
605 4ACETATE ION
lig 18
ACT
D
606 4ACETATE ION
lig 19
DGJ
E
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 20
NA
E
601 1SODIUM ION
lig 21
NA
E
602 1SODIUM ION
lig 22
NA
E
603 1SODIUM ION
lig 23
NA
E
604 1SODIUM ION
lig 24
DGJ
F
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 25
NA
F
601 1SODIUM ION
lig 26
NA
F
602 1SODIUM ION
lig 27
NA
F
603 1SODIUM ION
lig 28
NA
F
604 1SODIUM ION
lig 29
ACT
F
605 4ACETATE ION
lig 30
DGJ
G
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 31
NA
G
601 1SODIUM ION
lig 32
NA
G
602 1SODIUM ION
lig 33
NA
G
603 1SODIUM ION
lig 34
NA
G
604 1SODIUM ION
lig 35
DGJ
H
600 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 36
NA
H
601 1SODIUM ION