Analysis of Ligand-Protein Contacts in PDB entry:
4GM7


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 23 ligands in PDB entry 4GM7. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
HEM
A
601 43PROTOPORPHYRIN IX CONTAINING FE
lig 5
NAG
A
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
A
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
IOD
A
607 1IODIDE ION
lig 9
IOD
A
608 1IODIDE ION
lig 10
IOD
A
609 1IODIDE ION
lig 11
IOD
A
610 1IODIDE ION
lig 12
IOD
A
611 1IODIDE ION
lig 13
IOD
A
612 1IODIDE ION
lig 14
IOD
A
613 1IODIDE ION
lig 15
IOD
A
614 1IODIDE ION
lig 16
CA
A
615 1CALCIUM ION
lig 17
SCN
A
616 3THIOCYANATE ION
lig 18
PEG
A
617 7DI(HYDROXYETHYL)ETHER
lig 19
GOL
A
618 6GLYCEROL
lig 20
EDO
A
619 41,2-ETHANEDIOL
lig 21
EDO
A
620 41,2-ETHANEDIOL
lig 22
EDO
A
621 41,2-ETHANEDIOL
lig 23
HCI
A
622 11HYDROCINNAMIC ACID