Analysis of Ligand-Protein Contacts in PDB entry:
4LKM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 11 ligands in PDB entry 4LKM. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
5PV
B
-1 125-PHENYLVALERIC ACID
lig 2
ACA
B
0 86-AMINOHEXANOIC ACID
lig 3
TPO
B
5 11PHOSPHOTHREONINE
lig 4
NH2
B
7 1AMINO GROUP
lig 5
ACA
D
0 36-AMINOHEXANOIC ACID
lig 6
TPO
D
5 11PHOSPHOTHREONINE
lig 7
NH2
D
7 1AMINO GROUP
lig 8
SO4
A
701 5SULFATE ION
lig 9
GOL
B
201 6GLYCEROL
lig 10
SO4
C
701 5SULFATE ION
lig 11
GOL
D
301 6GLYCEROL