Analysis of Ligand-Protein Contacts in PDB entry:
4MD5


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 14 ligands in PDB entry 4MD5. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CIR
C
6 11CITRULLINE
lig 2
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
A
201 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
EDO
A
204 41,2-ETHANEDIOL
lig 6
EDO
A
205 41,2-ETHANEDIOL
lig 7
EDO
A
206 41,2-ETHANEDIOL
lig 8
EDO
A
207 41,2-ETHANEDIOL
lig 9
EDO
A
208 41,2-ETHANEDIOL
lig 10
NAG
B
201 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
EDO
B
202 41,2-ETHANEDIOL
lig 12
EDO
B
203 41,2-ETHANEDIOL
lig 13
EDO
B
204 41,2-ETHANEDIOL
lig 14
PGE
B
205 10TRIETHYLENE GLYCOL