Analysis of Ligand-Protein Contacts in PDB entry:
4MSF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 28 ligands in PDB entry 4MSF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
HEM
A
601 43PROTOPORPHYRIN IX CONTAINING FE
lig 3
CA
A
602 1CALCIUM ION
lig 4
NAG
A
603 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
A
604 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
A
605 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
606 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
IOD
A
607 1IODIDE ION
lig 9
IOD
A
608 1IODIDE ION
lig 10
IOD
A
609 1IODIDE ION
lig 11
IOD
A
610 1IODIDE ION
lig 12
IOD
A
611 1IODIDE ION
lig 13
IOD
A
612 1IODIDE ION
lig 14
IOD
A
613 1IODIDE ION
lig 15
IOD
A
614 1IODIDE ION
lig 16
IOD
A
615 1IODIDE ION
lig 17
IOD
A
616 1IODIDE ION
lig 18
IOD
A
617 1IODIDE ION
lig 19
IOD
A
618 1IODIDE ION
lig 20
IOD
A
619 1IODIDE ION
lig 21
IOD
A
620 1IODIDE ION
lig 22
IOD
A
621 1IODIDE ION
lig 23
SCN
A
622 3THIOCYANATE ION
lig 24
PEG
A
623 7DI(HYDROXYETHYL)ETHER
lig 25
PEG
A
624 7DI(HYDROXYETHYL)ETHER
lig 26
EDO
A
625 41,2-ETHANEDIOL
lig 27
EDO
A
626 41,2-ETHANEDIOL
lig 28
3HY
A
627 93-(HYDROXYMETHYL)PHENOL