Analysis of Ligand-Protein Contacts in PDB entry:
4NJB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 24 ligands in PDB entry 4NJB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
CA
A
601 1CALCIUM ION
lig 7
HEM
A
602 43PROTOPORPHYRIN IX CONTAINING FE
lig 8
NAG
A
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
A
608 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
IOD
A
609 1IODIDE ION
lig 11
IOD
A
610 1IODIDE ION
lig 12
IOD
A
611 1IODIDE ION
lig 13
IOD
A
612 1IODIDE ION
lig 14
IOD
A
613 1IODIDE ION
lig 15
IOD
A
614 1IODIDE ION
lig 16
IOD
A
615 1IODIDE ION
lig 17
IOD
A
616 1IODIDE ION
lig 18
IOD
A
617 1IODIDE ION
lig 19
IOD
A
618 1IODIDE ION
lig 20
IOD
A
619 1IODIDE ION
lig 21
PEG
A
620 7DI(HYDROXYETHYL)ETHER
lig 22
EDO
A
621 41,2-ETHANEDIOL
lig 23
EDO
A
622 41,2-ETHANEDIOL
lig 24
3OP
A
623 133,3'-OXYDIPYRIDINE