Analysis of Ligand-Protein Contacts in PDB entry:
4Y55


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 27 ligands in PDB entry 4Y55. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
CA
A
611 1CALCIUM ION
lig 13
IOD
A
612 1IODIDE ION
lig 14
IOD
A
613 1IODIDE ION
lig 15
IOD
A
614 1IODIDE ION
lig 16
IOD
A
615 1IODIDE ION
lig 17
IOD
A
616 1IODIDE ION
lig 18
NO3
A
617 4NITRATE ION
lig 19
NO3
A
618 4NITRATE ION
lig 20
NO3
A
619 4NITRATE ION
lig 21
NO3
A
620 4NITRATE ION
lig 22
HEM
A
621 43PROTOPORPHYRIN IX CONTAINING FE
lig 23
SCN
A
622 3THIOCYANATE ION
lig 24
SCN
A
623 3THIOCYANATE ION
lig 25
SCN
A
624 3THIOCYANATE ION
lig 26
SCN
A
625 3THIOCYANATE ION
lig 27
IOD
A
626 1IODIDE ION