Analysis of Ligand-Protein Contacts in PDB entry:
5D8H


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 5D8H. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
QUA
D
0 168-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CA
lig 2
DHA
D
3 52-AMINO-ACRYLIC ACID
lig 3
BB9
D
6 6(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 4
DBU
D
8 5(2Z)-2-AMINOBUT-2-ENOIC ACID
lig 5
DCY
D
9 6D-CYSTEINE
lig 6
TS9
D
10 9(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLP
lig 7
BB9
D
11 6(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 8
BB9
D
13 5(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 9
MH6
D
14 43-HYDROXY-2-IMINOPROPANOIC ACID
lig 10
BB9
D
15 6(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 11
DHA
D
16 52-AMINO-ACRYLIC ACID
lig 12
DHA
D
17 52-AMINO-ACRYLIC ACID
lig 13
NH2
D
18 1AMINO GROUP
lig 14
MG
A
1301 1MAGNESIUM ION
lig 15
MG
A
1302 1MAGNESIUM ION
lig 16
MG
A
1303 1MAGNESIUM ION
lig 17
MG
A
1304 1MAGNESIUM ION
lig 18
MG
A
1305 1MAGNESIUM ION
lig 19
MG
A
1306 1MAGNESIUM ION
lig 20
MG
A
1307 1MAGNESIUM ION
lig 21
MG
A
1308 1MAGNESIUM ION
lig 22
MG
A
1309 1MAGNESIUM ION
lig 23
MG
A
1310 1MAGNESIUM ION
lig 24
NA
A
1311 1SODIUM ION
lig 25
NA
A
1312 1SODIUM ION
lig 26
NA
A
1313 1SODIUM ION
lig 27
TRS
A
1314 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 28
TRS
A
1315 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 29
NA
B
301 1SODIUM ION
lig 30
TRS
B
302 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 31
MG
C
201 1MAGNESIUM ION