Analysis of Ligand-Protein Contacts in PDB entry:
5HHD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 306 ligands in PDB entry 5HHD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DAR
C
1 11D-ARGININE
lig 2
DAR
C
2 5D-ARGININE
lig 3
DAR
C
3 11D-ARGININE
lig 4
DAR
C
4 11D-ARGININE
lig 5
DAR
C
5 11D-ARGININE
lig 6
DSN
C
8 6D-SERINE
lig 7
DTH
C
9 7D-THREONINE
lig 8
DTY
C
10 12D-TYROSINE
lig 9
DLY
C
11 9D-LYSINE
lig 10
DLE
C
12 8D-LEUCINE
lig 11
DIL
C
13 8D-ISOLEUCINE
lig 12
DLE
C
14 8D-LEUCINE
lig 13
DSG
C
15 8D-ASPARAGINE
lig 14
DLY
C
17 9D-LYSINE
lig 15
DTH
C
18 7D-THREONINE
lig 16
DLE
C
19 8D-LEUCINE
lig 17
DLY
C
20 9D-LYSINE
lig 18
DGL
C
22 9D-GLUTAMIC ACID
lig 19
DTH
C
23 7D-THREONINE
lig 20
DTH
C
24 7D-THREONINE
lig 21
DTH
C
25 7D-THREONINE
lig 22
DGL
C
26 9D-GLUTAMIC ACID
lig 23
DAL
C
27 5D-ALANINE
lig 24
DVA
C
28 7D-VALINE
lig 25
DAS
C
29 8D-ASPARTIC ACID
lig 26
DVA
C
30 7D-VALINE
lig 27
DPN
C
31 11D-PHENYLALANINE
lig 28
DAS
C
32 8D-ASPARTIC ACID
lig 29
DAL
C
33 5D-ALANINE
lig 30
DPN
C
34 11D-PHENYLALANINE
lig 31
DAS
C
35 8D-ASPARTIC ACID
lig 32
DVA
C
36 7D-VALINE
lig 33
DPN
C
37 11D-PHENYLALANINE
lig 34
DPN
C
38 11D-PHENYLALANINE
lig 35
DVA
C
39 7D-VALINE
lig 36
DTY
C
40 12D-TYROSINE
lig 37
DAL
C
41 5D-ALANINE
lig 38
DAL
C
42 5D-ALANINE
lig 39
DSN
C
43 6D-SERINE
lig 40
DSG
C
44 8D-ASPARAGINE
lig 41
DPN
C
45 11D-PHENYLALANINE
lig 42
DSN
C
46 6D-SERINE
lig 43
DAS
C
47 8D-ASPARTIC ACID
lig 44
DPN
C
48 11D-PHENYLALANINE
lig 45
DAS
C
49 8D-ASPARTIC ACID
lig 46
DAS
C
50 8D-ASPARTIC ACID
lig 47
DTR
C
51 14D-TRYPTOPHAN
lig 48
DTH
C
52 7D-THREONINE
lig 49
DTY
C
53 12D-TYROSINE
lig 50
DAS
C
54 8D-ASPARTIC ACID
lig 51
DAS
C
55 8D-ASPARTIC ACID
lig 52
DAL
C
56 5D-ALANINE
lig 53
DTH
C
57 7D-THREONINE
lig 54
DLY
C
58 9D-LYSINE
lig 55
DTH
C
59 7D-THREONINE
lig 56
DPN
C
60 11D-PHENYLALANINE
lig 57
DTH
C
61 7D-THREONINE
lig 58
DVA
C
62 7D-VALINE
lig 59
DTH
C
63 7D-THREONINE
lig 60
DGL
C
64 9D-GLUTAMIC ACID
lig 61
DSN
C
67 6D-SERINE
lig 62
DAR
D
1 11D-ARGININE
lig 63
DAR
D
2 5D-ARGININE
lig 64
DAR
D
3 5D-ARGININE
lig 65
DAR
D
4 11D-ARGININE
lig 66
DAR
D
5 11D-ARGININE
lig 67
DSN
D
8 6D-SERINE
lig 68
DTH
D
9 7D-THREONINE
lig 69
DTY
D
10 12D-TYROSINE
lig 70
DLY
D
11 9D-LYSINE
lig 71
DLE
D
12 8D-LEUCINE
lig 72
DIL
D
13 8D-ISOLEUCINE
lig 73
DLE
D
14 8D-LEUCINE
lig 74
DSG
D
15 8D-ASPARAGINE
lig 75
DLY
D
17 9D-LYSINE
lig 76
DTH
D
18 7D-THREONINE
lig 77
DLE
D
19 8D-LEUCINE
lig 78
DLY
D
20 9D-LYSINE
lig 79
DGL
D
22 9D-GLUTAMIC ACID
lig 80
DTH
D
23 7D-THREONINE
lig 81
DTH
D
24 7D-THREONINE
lig 82
DTH
D
25 7D-THREONINE
lig 83
DGL
D
26 9D-GLUTAMIC ACID
lig 84
DAL
D
27 5D-ALANINE
lig 85
DVA
D
28 7D-VALINE
lig 86
DAS
D
29 8D-ASPARTIC ACID
lig 87
DVA
D
30 7D-VALINE
lig 88
DPN
D
31 11D-PHENYLALANINE
lig 89
DAS
D
32 8D-ASPARTIC ACID
lig 90
DAL
D
33 5D-ALANINE
lig 91
DPN
D
34 11D-PHENYLALANINE
lig 92
DAS
D
35 8D-ASPARTIC ACID
lig 93
DVA
D
36 7D-VALINE
lig 94
DPN
D
37 11D-PHENYLALANINE
lig 95
DPN
D
38 11D-PHENYLALANINE
lig 96
DVA
D
39 7D-VALINE
lig 97
DTY
D
40 12D-TYROSINE
lig 98
DAL
D
41 5D-ALANINE
lig 99
DAL
D
42 5D-ALANINE
lig 100
DSN
D
43 6D-SERINE
lig 101
DSG
D
44 8D-ASPARAGINE
lig 102
DPN
D
45 11D-PHENYLALANINE
lig 103
DSN
D
46 6D-SERINE
lig 104
DAS
D
47 8D-ASPARTIC ACID
lig 105
DPN
D
48 11D-PHENYLALANINE
lig 106
DAS
D
49 8D-ASPARTIC ACID
lig 107
DAS
D
50 8D-ASPARTIC ACID
lig 108
DTR
D
51 14D-TRYPTOPHAN
lig 109
DTH
D
52 7D-THREONINE
lig 110
DTY
D
53 12D-TYROSINE
lig 111
DAS
D
54 8D-ASPARTIC ACID
lig 112
DAS
D
55 8D-ASPARTIC ACID
lig 113
DAL
D
56 5D-ALANINE
lig 114
DTH
D
57 7D-THREONINE
lig 115
DLY
D
58 9D-LYSINE
lig 116
DTH
D
59 7D-THREONINE
lig 117
DPN
D
60 11D-PHENYLALANINE
lig 118
DTH
D
61 7D-THREONINE
lig 119
DVA
D
62 7D-VALINE
lig 120
DTH
D
63 7D-THREONINE
lig 121
DGL
D
64 9D-GLUTAMIC ACID
lig 122
DGL
E
6 9D-GLUTAMIC ACID
lig 123
DVA
E
7 7D-VALINE
lig 124
DVA
E
8 7D-VALINE
lig 125
DLY
E
9 9D-LYSINE
lig 126
DPN
E
10 11D-PHENYLALANINE
lig 127
MED
E
11 8D-METHIONINE
lig 128
DAS
E
12 8D-ASPARTIC ACID
lig 129
DVA
E
13 7D-VALINE
lig 130
DTY
E
14 12D-TYROSINE
lig 131
DGN
E
15 9D-GLUTAMINE
lig 132
DAR
E
16 11D-ARGININE
lig 133
DSN
E
17 6D-SERINE
lig 134
DTY
E
18 12D-TYROSINE
lig 135
DCY
E
19 6D-CYSTEINE
lig 136
DHI
E
20 10D-HISTIDINE
lig 137
DPR
E
21 7D-PROLINE
lig 138
DIL
E
22 8D-ISOLEUCINE
lig 139
DGL
E
23 9D-GLUTAMIC ACID
lig 140
DTH
E
24 7D-THREONINE
lig 141
DLE
E
25 8D-LEUCINE
lig 142
DVA
E
26 7D-VALINE
lig 143
DAS
E
27 8D-ASPARTIC ACID
lig 144
DIL
E
28 8D-ISOLEUCINE
lig 145
DPN
E
29 11D-PHENYLALANINE
lig 146
DGN
E
30 9D-GLUTAMINE
lig 147
DGL
E
31 9D-GLUTAMIC ACID
lig 148
DTY
E
32 12D-TYROSINE
lig 149
DPR
E
33 7D-PROLINE
lig 150
DAS
E
34 8D-ASPARTIC ACID
lig 151
DGL
E
35 9D-GLUTAMIC ACID
lig 152
DIL
E
36 8D-ISOLEUCINE
lig 153
DGL
E
37 9D-GLUTAMIC ACID
lig 154
DTY
E
38 12D-TYROSINE
lig 155
DIL
E
39 8D-ISOLEUCINE
lig 156
DPN
E
40 11D-PHENYLALANINE
lig 157
DLY
E
41 9D-LYSINE
lig 158
DPR
E
42 7D-PROLINE
lig 159
DSN
E
43 6D-SERINE
lig 160
DCY
E
44 6D-CYSTEINE
lig 161
DVA
E
45 7D-VALINE
lig 162
DPR
E
46 7D-PROLINE
lig 163
DLE
E
47 8D-LEUCINE
lig 164
MED
E
48 8D-METHIONINE
lig 165
DAR
E
49 11D-ARGININE
lig 166
DCY
E
50 6D-CYSTEINE
lig 167
DCY
E
53 6D-CYSTEINE
lig 168
DCY
E
54 6D-CYSTEINE
lig 169
DSG
E
55 8D-ASPARAGINE
lig 170
DAS
E
56 8D-ASPARTIC ACID
lig 171
DGL
E
57 9D-GLUTAMIC ACID
lig 172
DLE
E
59 8D-LEUCINE
lig 173
DGL
E
60 9D-GLUTAMIC ACID
lig 174
DCY
E
61 6D-CYSTEINE
lig 175
DVA
E
62 7D-VALINE
lig 176
DPR
E
63 7D-PROLINE
lig 177
DTH
E
64 7D-THREONINE
lig 178
DGL
E
65 9D-GLUTAMIC ACID
lig 179
DGL
E
66 9D-GLUTAMIC ACID
lig 180
DSN
E
67 6D-SERINE
lig 181
DSG
E
68 8D-ASPARAGINE
lig 182
DIL
E
69 8D-ISOLEUCINE
lig 183
DTH
E
70 7D-THREONINE
lig 184
MED
E
71 8D-METHIONINE
lig 185
DGN
E
72 9D-GLUTAMINE
lig 186
DIL
E
73 8D-ISOLEUCINE
lig 187
MED
E
74 8D-METHIONINE
lig 188
DAR
E
75 11D-ARGININE
lig 189
DIL
E
76 8D-ISOLEUCINE
lig 190
DLY
E
77 9D-LYSINE
lig 191
DPR
E
78 7D-PROLINE
lig 192
DHI
E
79 10D-HISTIDINE
lig 193
DGN
E
80 9D-GLUTAMINE
lig 194
DGN
E
82 9D-GLUTAMINE
lig 195
DHI
E
83 10D-HISTIDINE
lig 196
DIL
E
84 8D-ISOLEUCINE
lig 197
DGL
E
86 9D-GLUTAMIC ACID
lig 198
MED
E
87 8D-METHIONINE
lig 199
DSN
E
88 6D-SERINE
lig 200
DPN
E
89 11D-PHENYLALANINE
lig 201
DLE
E
90 8D-LEUCINE
lig 202
DGN
E
91 9D-GLUTAMINE
lig 203
DHI
E
92 10D-HISTIDINE
lig 204
DSG
E
93 8D-ASPARAGINE
lig 205
DLY
E
94 9D-LYSINE
lig 206
DCY
E
95 6D-CYSTEINE
lig 207
DGL
E
96 9D-GLUTAMIC ACID
lig 208
DCY
E
97 6D-CYSTEINE
lig 209
DAR
E
98 11D-ARGININE
lig 210
DPR
E
99 7D-PROLINE
lig 211
DLY
E
100 9D-LYSINE
lig 212
DGL
F
6 9D-GLUTAMIC ACID
lig 213
DVA
F
7 7D-VALINE
lig 214
DVA
F
8 7D-VALINE
lig 215
DLY
F
9 9D-LYSINE
lig 216
DPN
F
10 11D-PHENYLALANINE
lig 217
MED
F
11 8D-METHIONINE
lig 218
DAS
F
12 8D-ASPARTIC ACID
lig 219
DVA
F
13 7D-VALINE
lig 220
DTY
F
14 12D-TYROSINE
lig 221
DGN
F
15 9D-GLUTAMINE
lig 222
DAR
F
16 11D-ARGININE
lig 223
DSN
F
17 6D-SERINE
lig 224
DTY
F
18 12D-TYROSINE
lig 225
DCY
F
19 6D-CYSTEINE
lig 226
DHI
F
20 10D-HISTIDINE
lig 227
DPR
F
21 7D-PROLINE
lig 228
DIL
F
22 8D-ISOLEUCINE
lig 229
DGL
F
23 9D-GLUTAMIC ACID
lig 230
DTH
F
24 7D-THREONINE
lig 231
DLE
F
25 8D-LEUCINE
lig 232
DVA
F
26 7D-VALINE
lig 233
DAS
F
27 8D-ASPARTIC ACID
lig 234
DIL
F
28 8D-ISOLEUCINE
lig 235
DPN
F
29 11D-PHENYLALANINE
lig 236
DGN
F
30 9D-GLUTAMINE
lig 237
DGL
F
31 9D-GLUTAMIC ACID
lig 238
DTY
F
32 12D-TYROSINE
lig 239
DPR
F
33 7D-PROLINE
lig 240
DAS
F
34 8D-ASPARTIC ACID
lig 241
DGL
F
35 9D-GLUTAMIC ACID
lig 242
DIL
F
36 8D-ISOLEUCINE
lig 243
DGL
F
37 9D-GLUTAMIC ACID
lig 244
DTY
F
38 12D-TYROSINE
lig 245
DIL
F
39 8D-ISOLEUCINE
lig 246
DPN
F
40 11D-PHENYLALANINE
lig 247
DLY
F
41 9D-LYSINE
lig 248
DPR
F
42 7D-PROLINE
lig 249
DSN
F
43 6D-SERINE
lig 250
DCY
F
44 6D-CYSTEINE
lig 251
DVA
F
45 7D-VALINE
lig 252
DPR
F
46 7D-PROLINE
lig 253
DLE
F
47 8D-LEUCINE
lig 254
MED
F
48 8D-METHIONINE
lig 255
DAR
F
49 11D-ARGININE
lig 256
DCY
F
50 6D-CYSTEINE
lig 257
DCY
F
53 6D-CYSTEINE
lig 258
DCY
F
54 6D-CYSTEINE
lig 259
DSG
F
55 8D-ASPARAGINE
lig 260
DAS
F
56 8D-ASPARTIC ACID
lig 261
DGL
F
57 9D-GLUTAMIC ACID
lig 262
DLE
F
59 8D-LEUCINE
lig 263
DGL
F
60 9D-GLUTAMIC ACID
lig 264
DCY
F
61 6D-CYSTEINE
lig 265
DVA
F
62 7D-VALINE
lig 266
DPR
F
63 7D-PROLINE
lig 267
DTH
F
64 7D-THREONINE
lig 268
DGL
F
65 9D-GLUTAMIC ACID
lig 269
DGL
F
66 9D-GLUTAMIC ACID
lig 270
DSN
F
67 6D-SERINE
lig 271
DSG
F
68 8D-ASPARAGINE
lig 272
DIL
F
69 8D-ISOLEUCINE
lig 273
DTH
F
70 7D-THREONINE
lig 274
MED
F
71 8D-METHIONINE
lig 275
DGN
F
72 9D-GLUTAMINE
lig 276
DIL
F
73 8D-ISOLEUCINE
lig 277
MED
F
74 8D-METHIONINE
lig 278
DAR
F
75 5D-ARGININE
lig 279
DIL
F
76 8D-ISOLEUCINE
lig 280
DLY
F
77 9D-LYSINE
lig 281
DPR
F
78 7D-PROLINE
lig 282
DHI
F
79 10D-HISTIDINE
lig 283
DGN
F
80 9D-GLUTAMINE
lig 284
DGN
F
82 9D-GLUTAMINE
lig 285
DHI
F
83 10D-HISTIDINE
lig 286
DIL
F
84 8D-ISOLEUCINE
lig 287
DGL
F
86 9D-GLUTAMIC ACID
lig 288
MED
F
87 8D-METHIONINE
lig 289
DSN
F
88 6D-SERINE
lig 290
DPN
F
89 11D-PHENYLALANINE
lig 291
DLE
F
90 8D-LEUCINE
lig 292
DGN
F
91 9D-GLUTAMINE
lig 293
DHI
F
92 10D-HISTIDINE
lig 294
DSG
F
93 8D-ASPARAGINE
lig 295
DLY
F
94 9D-LYSINE
lig 296
DCY
F
95 6D-CYSTEINE
lig 297
DGL
F
96 9D-GLUTAMIC ACID
lig 298
DCY
F
97 6D-CYSTEINE
lig 299
DAR
F
98 11D-ARGININE
lig 300
DPR
F
99 7D-PROLINE
lig 301
DLY
F
100 9D-LYSINE
lig 302
GOL
A
201 6GLYCEROL
lig 303
GOL
A
202 6GLYCEROL
lig 304
GOL
A
203 6GLYCEROL
lig 305
GOL
F
201 6GLYCEROL
lig 306
PEG
H
101 7DI(HYDROXYETHYL)ETHER