Analysis of Ligand-Protein Contacts in PDB entry:
5NJ4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 40 ligands in PDB entry 5NJ4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
H
1 10N-FORMYLMETHIONINE
lig 2
HEC
C
401 43HEME C
lig 3
HEC
C
402 43HEME C
lig 4
HEC
C
403 43HEME C
lig 5
HEC
C
404 43HEME C
lig 6
DGA
C
405 37DIACYL GLYCEROL
lig 7
SO4
C
406 5SULFATE ION
lig 8
SO4
C
407 5SULFATE ION
lig 9
SO4
C
408 5SULFATE ION
lig 10
LDA
H
701 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 11
SO4
H
702 5SULFATE ION
lig 12
SO4
H
703 5SULFATE ION
lig 13
SO4
H
704 5SULFATE ION
lig 14
SO4
H
705 5SULFATE ION
lig 15
LDA
H
706 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 16
LDA
H
707 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 17
HTO
H
708 10HEPTANE-1,2,3-TRIOL
lig 18
HTO
H
709 10HEPTANE-1,2,3-TRIOL
lig 19
BCB
L
301 66BACTERIOCHLOROPHYLL B
lig 20
BCB
L
302 66BACTERIOCHLOROPHYLL B
lig 21
BPB
L
303 65BACTERIOPHEOPHYTIN B
lig 22
LDA
L
304 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 23
HTO
L
305 10HEPTANE-1,2,3-TRIOL
lig 24
FE2
L
306 1FE (II) ION
lig 25
MQ7
M
401 48MENAQUINONE-7
lig 26
BCB
M
402 66BACTERIOCHLOROPHYLL B
lig 27
BCB
M
403 66BACTERIOCHLOROPHYLL B
lig 28
BPB
M
404 65BACTERIOPHEOPHYTIN B
lig 29
NS5
M
405 4015-CIS-1,2-DIHYDRONEUROSPORENE
lig 30
SO4
M
406 5SULFATE ION
lig 31
SO4
M
407 5SULFATE ION
lig 32
SO4
M
408 5SULFATE ION
lig 33
SO4
M
409 5SULFATE ION
lig 34
SO4
M
410 5SULFATE ION
lig 35
SO4
M
411 5SULFATE ION
lig 36
SO4
M
412 5SULFATE ION
lig 37
SO4
M
413 5SULFATE ION
lig 38
LDA
M
414 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 39
LDA
M
415 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 40
LDA
M
416 16LAURYL DIMETHYLAMINE-N-OXIDE