Analysis of Ligand-Protein Contacts in PDB entry:
5UPH


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 39 ligands in PDB entry 5UPH. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 10
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 12
M6D
E
6 156-O-PHOSPHONO-BETA-D-MANNOPYRANOSE
lig 13
MAN
E
7 11ALPHA-D-MANNOPYRANOSE
lig 14
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 17
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 19
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 22
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 23
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 24
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 29
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 30
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 33
MAN
J
4 11ALPHA-D-MANNOPYRANOSE
lig 34
MAN
J
5 11ALPHA-D-MANNOPYRANOSE
lig 35
CLR
A
518 28CHOLESTEROL
lig 36
PCW
A
519 541,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 37
CLR
B
517 28CHOLESTEROL
lig 38
PCW
B
518 541,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 39
PCW
B
519 111,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE