Analysis of Ligand-Protein Contacts in PDB entry:
5VKI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 12 ligands in PDB entry 5VKI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NGA
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE
lig 2
GAL
C
2 11BETA-D-GALACTOPYRANOSE
lig 3
NAG
C
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NGA
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE
lig 5
GAL
D
2 11BETA-D-GALACTOPYRANOSE
lig 6
NAG
D
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
SO4
A
301 5SULFATE ION
lig 8
GOL
A
302 6GLYCEROL
lig 9
THR
A
303 8THREONINE
lig 10
SO4
B
301 5SULFATE ION
lig 11
GOL
B
302 6GLYCEROL
lig 12
THR
B
303 8THREONINE