Analysis of Ligand-Protein Contacts in PDB entry:
5VMJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 14 ligands in PDB entry 5VMJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GAL
G
1 11BETA-D-GALACTOPYRANOSE
lig 2
SIA
G
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 3
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 6
GAL
I
1 11BETA-D-GALACTOPYRANOSE
lig 7
SIA
I
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 8
GAL
J
1 11BETA-D-GALACTOPYRANOSE
lig 9
SIA
J
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 10
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
K
2 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
A
806 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
C
803 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
C
804 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE