Analysis of Ligand-Protein Contacts in PDB entry:
5YGA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 12 ligands in PDB entry 5YGA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
RI2
A
401 181,5-DI-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 2
MPD
A
402 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 3
AMP
A
403 23ADENOSINE MONOPHOSPHATE
lig 4
K
A
404 1POTASSIUM ION
lig 5
RI2
B
401 181,5-DI-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 6
AMP
B
402 23ADENOSINE MONOPHOSPHATE
lig 7
K
B
403 1POTASSIUM ION
lig 8
5GP
B
404 24GUANOSINE-5'-MONOPHOSPHATE
lig 9
RI2
C
401 181,5-DI-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
lig 10
AMP
C
402 23ADENOSINE MONOPHOSPHATE
lig 11
K
C
403 1POTASSIUM ION
lig 12
5GP
C
404 24GUANOSINE-5'-MONOPHOSPHATE