Analysis of Ligand-Protein Contacts in PDB entry:
5YPK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 39 ligands in PDB entry 5YPK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ZN
A
301 1ZINC ION
lig 2
ZN
A
302 1ZINC ION
lig 3
HIW
A
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID
lig 4
SO4
A
304 5SULFATE ION
lig 5
ZN
B
301 1ZINC ION
lig 6
ZN
B
302 1ZINC ION
lig 7
HIW
B
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID
lig 8
SO4
B
304 5SULFATE ION
lig 9
ZN
C
301 1ZINC ION
lig 10
ZN
C
302 1ZINC ION
lig 11
HIW
C
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID
lig 12
SO4
C
304 5SULFATE ION
lig 13
SO4
C
305 5SULFATE ION
lig 14
NA
C
306 1SODIUM ION
lig 15
NA
C
307 1SODIUM ION
lig 16
ZN
D
301 1ZINC ION
lig 17
ZN
D
302 1ZINC ION
lig 18
HIW
D
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID
lig 19
SO4
D
304 5SULFATE ION
lig 20
CL
D
305 1CHLORIDE ION
lig 21
NA
D
306 1SODIUM ION
lig 22
NA
D
307 1SODIUM ION
lig 23
ZN
E
301 1ZINC ION
lig 24
ZN
E
302 1ZINC ION
lig 25
HIW
E
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID
lig 26
SO4
E
304 5SULFATE ION
lig 27
NA
E
305 1SODIUM ION
lig 28
ZN
F
301 1ZINC ION
lig 29
ZN
F
302 1ZINC ION
lig 30
HIW
F
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID
lig 31
SO4
F
304 5SULFATE ION
lig 32
NA
F
305 1SODIUM ION
lig 33
ZN
G
301 1ZINC ION
lig 34
ZN
G
302 1ZINC ION
lig 35
HIW
G
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID
lig 36
NA
G
304 1SODIUM ION
lig 37
ZN
H
301 1ZINC ION
lig 38
ZN
H
302 1ZINC ION
lig 39
HIW
H
303 21 2H-PYRROLE-5-CA RBOXYLIC ACID