Analysis of Ligand-Protein Contacts in PDB entry:
5AFA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 22 ligands in PDB entry 5AFA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MPD
A
1463 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 2
MRD
A
1464 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 3
MRD
A
1465 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 4
MRD
A
1466 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 5
MRD
A
1467 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 6
MRD
A
1468 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 7
MRD
A
1469 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 8
MPD
A
1470 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 9
MPD
A
1471 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 10
MPD
A
1472 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 11
MPD
A
1473 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 12
MRD
A
1474 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 13
MPD
A
1475 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 14
MRD
A
1476 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 15
AG
A
1477 1SILVER ION
lig 16
AG
A
1478 1SILVER ION
lig 17
AG
A
1479 1SILVER ION
lig 18
CU
A
1480 1COPPER (II) ION
lig 19
CU
A
1481 1COPPER (II) ION
lig 20
CU
A
1482 1COPPER (II) ION
lig 21
CU
A
1483 1COPPER (II) ION
lig 22
OH
A
1484 1HYDROXIDE ION