Analysis of Ligand-Protein Contacts in PDB entry:
5AFK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 28 ligands in PDB entry 5AFK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
L0B
A
1205 25ALPHA-LOBELINE
lig 14
GOL
A
1206 6GLYCEROL
lig 15
5VU
A
1207 16N-(2,4-DIFLUOROPHENYL)PYRROLIDINE-1-CARBOX
lig 16
L0B
B
1205 25ALPHA-LOBELINE
lig 17
GOL
B
1206 6GLYCEROL
lig 18
5VU
B
1207 16N-(2,4-DIFLUOROPHENYL)PYRROLIDINE-1-CARBOX
lig 19
L0B
C
1205 25ALPHA-LOBELINE
lig 20
GOL
C
1206 6GLYCEROL
lig 21
GOL
C
1207 6GLYCEROL
lig 22
5VU
C
1208 16N-(2,4-DIFLUOROPHENYL)PYRROLIDINE-1-CARBOX
lig 23
L0B
D
1205 25ALPHA-LOBELINE
lig 24
5VU
D
1206 16N-(2,4-DIFLUOROPHENYL)PYRROLIDINE-1-CARBOX
lig 25
L0B
E
1205 25ALPHA-LOBELINE
lig 26
GOL
E
1206 6GLYCEROL
lig 27
5VU
E
1207 16N-(2,4-DIFLUOROPHENYL)PYRROLIDINE-1-CARBOX
lig 28
5VU
E
1208 16N-(2,4-DIFLUOROPHENYL)PYRROLIDINE-1-CARBOX