Analysis of Ligand-Protein Contacts in PDB entry:
5AFM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 24 ligands in PDB entry 5AFM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
A
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
L0B
A
1205 25ALPHA-LOBELINE
lig 4
GOL
A
1206 6GLYCEROL
lig 5
9Z0
A
1207 14 CARBOXAMIDE
lig 6
NAG
B
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
B
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
L0B
B
1207 25ALPHA-LOBELINE
lig 9
9Z0
B
1208 14 CARBOXAMIDE
lig 10
NAG
C
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
C
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
L0B
C
1205 25ALPHA-LOBELINE
lig 13
GOL
C
1206 6GLYCEROL
lig 14
9Z0
C
1207 14 CARBOXAMIDE
lig 15
NAG
D
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
D
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
L0B
D
1205 25ALPHA-LOBELINE
lig 18
GOL
D
1206 6GLYCEROL
lig 19
9Z0
D
1207 14 CARBOXAMIDE
lig 20
NAG
E
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
E
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
L0B
E
1205 25ALPHA-LOBELINE
lig 23
GOL
E
1206 6GLYCEROL
lig 24
9Z0
E
1207 14 CARBOXAMIDE