Analysis of Ligand-Protein Contacts in PDB entry:
5AFN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 26 ligands in PDB entry 5AFN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
A
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
A
303 11BETA-D-MANNOPYRANOSE
lig 4
MAN
A
304 11ALPHA-D-MANNOPYRANOSE
lig 5
L0B
A
1205 25ALPHA-LOBELINE
lig 6
OJD
A
1215 14(4R)-4-(2-PHENYLETHYL)PYRROLIDIN-2-ONE
lig 7
NAG
B
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
B
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
L0B
B
1207 25ALPHA-LOBELINE
lig 10
OJD
B
1217 14(4R)-4-(2-PHENYLETHYL)PYRROLIDIN-2-ONE
lig 11
NAG
C
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
C
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
L0B
C
1205 25ALPHA-LOBELINE
lig 14
OJD
C
1215 14(4R)-4-(2-PHENYLETHYL)PYRROLIDIN-2-ONE
lig 15
NAG
D
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
D
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
L0B
D
1205 25ALPHA-LOBELINE
lig 18
GOL
D
1206 6GLYCEROL
lig 19
OJD
D
1215 14(4R)-4-(2-PHENYLETHYL)PYRROLIDIN-2-ONE
lig 20
NAG
E
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
E
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
L0B
E
1205 25ALPHA-LOBELINE
lig 23
GOL
E
1206 6GLYCEROL
lig 24
GOL
E
1207 6GLYCEROL
lig 25
GOL
E
1208 6GLYCEROL
lig 26
OJD
E
1215 14(4R)-4-(2-PHENYLETHYL)PYRROLIDIN-2-ONE