Analysis of Ligand-Protein Contacts in PDB entry:
5AGV


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 39 ligands in PDB entry 5AGV. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ACE
C
1 3ACETYL GROUP
lig 2
MVA
C
2 8N-METHYLVALINE
lig 3
MP8
C
3 8(4R)-4-METHYL-L-PROLINE
lig 4
NZC
C
4 8N-METHYLIDENE-L-THREONINE
lig 5
MP8
C
6 8(4R)-4-METHYL-L-PROLINE
lig 6
MVA
C
8 8N-METHYLVALINE
lig 7
PH6
C
9 13(4S)-4-CYCLOHEXYL-L-PROLINE
lig 8
MLU
C
10 9N-METHYL-D-LEUCINE
lig 9
ACE
D
1 3ACETYL GROUP
lig 10
MVA
D
2 8N-METHYLVALINE
lig 11
MP8
D
3 8(4R)-4-METHYL-L-PROLINE
lig 12
NZC
D
4 8N-METHYLIDENE-L-THREONINE
lig 13
MP8
D
6 8(4R)-4-METHYL-L-PROLINE
lig 14
MVA
D
8 8N-METHYLVALINE
lig 15
PH6
D
9 13(4S)-4-CYCLOHEXYL-L-PROLINE
lig 16
MLU
D
10 9N-METHYL-D-LEUCINE
lig 17
CA
A
501 1CALCIUM ION
lig 18
NA
A
502 1SODIUM ION
lig 19
NA
A
503 1SODIUM ION
lig 20
NA
A
504 1SODIUM ION
lig 21
NA
A
505 1SODIUM ION
lig 22
NA
A
506 1SODIUM ION
lig 23
NA
A
507 1SODIUM ION
lig 24
BU3
A
508 6(R,R)-2,3-BUTANEDIOL
lig 25
BU3
A
509 6(R,R)-2,3-BUTANEDIOL
lig 26
BU3
A
510 6(R,R)-2,3-BUTANEDIOL
lig 27
NA
B
501 1SODIUM ION
lig 28
CA
B
502 1CALCIUM ION
lig 29
CA
B
503 1CALCIUM ION
lig 30
CA
B
504 1CALCIUM ION
lig 31
CA
B
505 1CALCIUM ION
lig 32
CA
B
506 1CALCIUM ION
lig 33
NA
B
507 1SODIUM ION
lig 34
NA
B
508 1SODIUM ION
lig 35
NA
B
509 1SODIUM ION
lig 36
NA
B
510 1SODIUM ION
lig 37
NA
B
511 1SODIUM ION
lig 38
BU3
B
512 6(R,R)-2,3-BUTANEDIOL
lig 39
BU3
B
513 6(R,R)-2,3-BUTANEDIOL