Analysis of Ligand-Protein Contacts in PDB entry:
5AMC


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 5AMC. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
FUC
C
2 10ALPHA-L-FUCOPYRANOSE
lig 3
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 8
FUC
E
4 10ALPHA-L-FUCOPYRANOSE
lig 9
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
F
2 10ALPHA-L-FUCOPYRANOSE
lig 11
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 16
GLY
A
906 4GLYCINE
lig 17
NIY
A
907 16META-NITRO-TYROSINE
lig 18
ZN
A
1001 1ZINC ION
lig 19
CL
A
1611 1CHLORIDE ION
lig 20
PEG
A
1620 7DI(HYDROXYETHYL)ETHER
lig 21
PEG
A
1621 7DI(HYDROXYETHYL)ETHER
lig 22
PEG
A
1622 7DI(HYDROXYETHYL)ETHER
lig 23
GLY
B
906 4GLYCINE
lig 24
NIY
B
907 16META-NITRO-TYROSINE
lig 25
ZN
B
1001 1ZINC ION
lig 26
PG4
B
1611 10TETRAETHYLENE GLYCOL
lig 27
CL
B
1612 1CHLORIDE ION
lig 28
PEG
B
1620 7DI(HYDROXYETHYL)ETHER
lig 29
P6G
B
1621 19HEXAETHYLENE GLYCOL
lig 30
PEG
B
1622 7DI(HYDROXYETHYL)ETHER
lig 31
PEG
B
1623 7DI(HYDROXYETHYL)ETHER