Analysis of Ligand-Protein Contacts in PDB entry:
5AP1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 12 ligands in PDB entry 5AP1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
675 11PHOSPHOTHREONINE
lig 2
TPO
A
676 11PHOSPHOTHREONINE
lig 3
SEP
A
677 10PHOSPHOSERINE
lig 4
TPO
A
686 11PHOSPHOTHREONINE
lig 5
O38
A
1796 32 CARBONITRILE
lig 6
GOL
A
1797 6GLYCEROL
lig 7
GOL
A
1798 6GLYCEROL
lig 8
GOL
A
1799 6GLYCEROL
lig 9
GOL
A
1800 6GLYCEROL
lig 10
MG
A
1801 1MAGNESIUM ION
lig 11
MG
A
1802 1MAGNESIUM ION
lig 12
MG
A
1803 1MAGNESIUM ION