Analysis of Ligand-Protein Contacts in PDB entry:
5AVA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 80 ligands in PDB entry 5AVA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
BMA
I
2 11BETA-D-MANNOPYRANOSE
lig 3
MAN
I
3 11ALPHA-D-MANNOPYRANOSE
lig 4
NAG
I
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
GAL
I
5 11BETA-D-GALACTOPYRANOSE
lig 6
MAN
I
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
I
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
I
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
J
2 11BETA-D-MANNOPYRANOSE
lig 11
MAN
J
3 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
J
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
GAL
J
5 11BETA-D-GALACTOPYRANOSE
lig 14
MAN
J
6 11ALPHA-D-MANNOPYRANOSE
lig 15
NAG
J
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
J
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
BMA
K
2 11BETA-D-MANNOPYRANOSE
lig 19
MAN
K
3 11ALPHA-D-MANNOPYRANOSE
lig 20
NAG
K
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
GAL
K
5 11BETA-D-GALACTOPYRANOSE
lig 22
MAN
K
6 11ALPHA-D-MANNOPYRANOSE
lig 23
NAG
K
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
K
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
BMA
L
2 11BETA-D-MANNOPYRANOSE
lig 27
MAN
L
3 11ALPHA-D-MANNOPYRANOSE
lig 28
NAG
L
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
GAL
L
5 11BETA-D-GALACTOPYRANOSE
lig 30
MAN
L
6 11ALPHA-D-MANNOPYRANOSE
lig 31
NAG
L
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
L
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
BMA
M
2 11BETA-D-MANNOPYRANOSE
lig 35
MAN
M
3 11ALPHA-D-MANNOPYRANOSE
lig 36
NAG
M
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
GAL
M
5 11BETA-D-GALACTOPYRANOSE
lig 38
MAN
M
6 11ALPHA-D-MANNOPYRANOSE
lig 39
NAG
M
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
M
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
BMA
N
2 11BETA-D-MANNOPYRANOSE
lig 43
MAN
N
3 11ALPHA-D-MANNOPYRANOSE
lig 44
NAG
N
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
GAL
N
5 11BETA-D-GALACTOPYRANOSE
lig 46
MAN
N
6 11ALPHA-D-MANNOPYRANOSE
lig 47
NAG
N
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
NAG
N
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
BMA
O
2 11BETA-D-MANNOPYRANOSE
lig 51
MAN
O
3 11ALPHA-D-MANNOPYRANOSE
lig 52
NAG
O
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
GAL
O
5 11BETA-D-GALACTOPYRANOSE
lig 54
MAN
O
6 11ALPHA-D-MANNOPYRANOSE
lig 55
NAG
O
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
NAG
O
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 57
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 58
BMA
P
2 11BETA-D-MANNOPYRANOSE
lig 59
MAN
P
3 11ALPHA-D-MANNOPYRANOSE
lig 60
NAG
P
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 61
GAL
P
5 11BETA-D-GALACTOPYRANOSE
lig 62
MAN
P
6 11ALPHA-D-MANNOPYRANOSE
lig 63
NAG
P
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 64
NAG
P
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
MN
A
2001 1MANGANESE (II) ION
lig 66
CA
A
2002 1CALCIUM ION
lig 67
MN
B
2001 1MANGANESE (II) ION
lig 68
CA
B
2002 1CALCIUM ION
lig 69
MN
C
2001 1MANGANESE (II) ION
lig 70
CA
C
2002 1CALCIUM ION
lig 71
MN
D
2001 1MANGANESE (II) ION
lig 72
CA
D
2002 1CALCIUM ION
lig 73
MN
E
2001 1MANGANESE (II) ION
lig 74
CA
E
2002 1CALCIUM ION
lig 75
MN
F
2001 1MANGANESE (II) ION
lig 76
CA
F
2002 1CALCIUM ION
lig 77
MN
G
2001 1MANGANESE (II) ION
lig 78
CA
G
2002 1CALCIUM ION
lig 79
MN
H
2001 1MANGANESE (II) ION
lig 80
CA
H
2002 1CALCIUM ION