Analysis of Ligand-Protein Contacts in PDB entry:
5CGO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 44 ligands in PDB entry 5CGO. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
XCP
A
15 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 2
XCP
B
15 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 3
DIL
C
4 8D-ISOLEUCINE
lig 4
DLY
C
6 9D-LYSINE
lig 5
DPN
C
7 11D-PHENYLALANINE
lig 6
DLE
C
8 8D-LEUCINE
lig 7
DHI
C
9 10D-HISTIDINE
lig 8
DAL
C
10 5D-ALANINE
lig 9
DAL
C
11 5D-ALANINE
lig 10
DLY
C
12 9D-LYSINE
lig 11
DLY
C
13 9D-LYSINE
lig 12
DPN
C
14 11D-PHENYLALANINE
lig 13
DAL
C
15 5D-ALANINE
lig 14
DLY
C
16 9D-LYSINE
lig 15
DAL
C
17 5D-ALANINE
lig 16
DPN
C
18 11D-PHENYLALANINE
lig 17
DVA
C
19 7D-VALINE
lig 18
DAL
C
20 5D-ALANINE
lig 19
DGL
C
21 9D-GLUTAMIC ACID
lig 20
DIL
C
22 8D-ISOLEUCINE
lig 21
MED
C
23 8D-METHIONINE
lig 22
DSG
C
24 8D-ASPARAGINE
lig 23
DSE
C
25 7N-METHYL-D-SERINE
lig 24
DIL
D
4 8D-ISOLEUCINE
lig 25
DLY
D
6 9D-LYSINE
lig 26
DPN
D
7 11D-PHENYLALANINE
lig 27
DLE
D
8 8D-LEUCINE
lig 28
DHI
D
9 10D-HISTIDINE
lig 29
DAL
D
10 5D-ALANINE
lig 30
DAL
D
11 5D-ALANINE
lig 31
DLY
D
12 9D-LYSINE
lig 32
DLY
D
13 9D-LYSINE
lig 33
DPN
D
14 11D-PHENYLALANINE
lig 34
DAL
D
15 5D-ALANINE
lig 35
DLY
D
16 5D-LYSINE
lig 36
DAL
D
17 5D-ALANINE
lig 37
DPN
D
18 11D-PHENYLALANINE
lig 38
DVA
D
19 7D-VALINE
lig 39
DAL
D
20 5D-ALANINE
lig 40
DGL
D
21 9D-GLUTAMIC ACID
lig 41
DIL
D
22 8D-ISOLEUCINE
lig 42
MED
D
23 8D-METHIONINE
lig 43
DSG
D
24 8D-ASPARAGINE
lig 44
DSE
D
25 7N-METHYL-D-SERINE